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RTP_02272018_0_2um_scaffold_1658

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_1658_1
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..130)
DNA (129bp) protein (43aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-604-O16 RepID=UPI00036D68C6
prevent-host-death family protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
RTP_02272018_0_2um_scaffold_1658_2
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(323..1258)
DNA (936bp) protein (312aa)
glycosyl transferase family 2 n=1 Tax=Salisaeta longa RepID=UPI0003B448C4
Uncharacterized protein {ECO:0000313|EMBL:KER09428.1}; TaxID=1519464 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium sp. GBChlB.;"
glycosyl transferase family protein
RTP_02272018_0_2um_scaffold_1658_3
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1302..2531)
DNA (1230bp) protein (410aa)
C-methyltransferase n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QNY1_METS6
c-methyltransferase
Tax=BJP_08E140C01_Dechloromonas_61_78
RTP_02272018_0_2um_scaffold_1658_4
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2556..3524)
DNA (969bp) protein (323aa)
dTDP-glucose 4,6-dehydratase n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QNY2_METS6
gmd; dTDP-glucose 4,6-dehydratase
Tax=GWA2_Curvibacter_64_110_curated
RTP_02272018_0_2um_scaffold_1658_5
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3532..4575)
DNA (1044bp) protein (348aa)
Glycosyl transferase, family 2 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125A6_POLSJ
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABE45886.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
RTP_02272018_0_2um_scaffold_1658_6
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4575..5576)
DNA (1002bp) protein (334aa)
Glycosyl transferase, family 2 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125A5_POLSJ
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABE45887.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
RTP_02272018_0_2um_scaffold_1658_7
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5573..6610)
DNA (1038bp) protein (346aa)
Glycosyl transferase, group 1 id=2088322 bin=GWB2_Proteobacteria_55_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
group 1 glycosyl transferase
Tax=GWC2_Geobacteraceae_53_11_curated
RTP_02272018_0_2um_scaffold_1658_8
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

comp(6649..7362)
DNA (714bp) protein (238aa)
Methyltransferase type 11 id=4237563 bin=GWF2_OP3_43_52 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
type 11 methyltransferase
Tax=GWF2_WOR_2_43_52_curated
RTP_02272018_0_2um_scaffold_1658_9
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7399..8913)
DNA (1515bp) protein (505aa)
Polysaccharide biosynthesis protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125A3_POLSJ
polysaccharide biosynthesis protein
Tax=BJP_08E140C01_Dechloromonas_61_78
RTP_02272018_0_2um_scaffold_1658_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8920..10002)
DNA (1083bp) protein (361aa)
GDP-mannose 4,6-dehydratase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003744ED4
GDP-mannose 4,6-dehydratase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_1658_11
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9999..10454)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Methylotenera mobilis RepID=UPI00036F60E7
transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
RTP_02272018_0_2um_scaffold_1658_12
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10632..10844)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. AKL17 RepID=UPI0003724544
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP48552.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_02272018_0_2um_scaffold_1658_13
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10969..11268)
DNA (300bp) protein (100aa)
DNA polymerase III subunit beta n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G392_9GAMM
DNA polymerase III subunit beta
DNA polymerase III subunit beta {ECO:0000313|EMBL:AJP48553.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_02272018_0_2um_scaffold_1658_14
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11286..11822)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B4BE01
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RTP_02272018_0_2um_scaffold_1658_15
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11819..12109)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-604-O16 RepID=UPI0003675C49
DNA polymerase subunit beta
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RTP_02272018_0_2um_scaffold_1658_16
unknown

Not on your lists

12207..12374
DNA (168bp) protein (56aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_1658_17
Sulfurovum lithotrophicum, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12410..12748)
DNA (339bp) protein (113aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF24138.1}; TaxID=206403 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum lithotrophicum.;"
Putative transcriptional regulator id=4767054 bin=GWC2_Elusimicrobia_51_8 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
ATP-dependent DNA helicase
RTP_02272018_0_2um_scaffold_1658_18
Sulfurovum lithotrophicum, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12727..13737)
DNA (1011bp) protein (337aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF24138.1}; TaxID=206403 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum lithotrophicum.;"
Divergent AAA region id=3124737 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
transcriptional regulator
RTP_02272018_0_2um_scaffold_1658_19
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14038..14862)
DNA (825bp) protein (275aa)
Type II secretory pathway, component PulD n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QKA2_AZOSU
type II secretory pathway, component PulD
Tax=BJP_IG2103_Dechloromonas_60_92
RTP_02272018_0_2um_scaffold_1658_20
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14862..15821)
DNA (960bp) protein (320aa)
beta lactamase id=12497315 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
soxH; beta lactamase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_1658_21

Not on your lists

15920..16459
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QS51_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10073.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1658_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16466..17374
DNA (909bp) protein (303aa)
CobD/CbiB family protein (EC:6.3.1.10)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000382D339
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_1658_23
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17384..18019
DNA (636bp) protein (212aa)
membrane protein n=1 Tax=Methylovulum miyakonense RepID=UPI00035E5B9F
Fused spore maturation proteins A and B
Tax=CG_Hydro_01
Displaying 23 items

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