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RTP_02272018_0_2um_scaffold_2047

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_2047_1
Shewanella xiamenensis, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..408
DNA (408bp) protein (136aa)
mltD; membrane-bound lytic murein transglycosylase D (EC:3.2.1.-)
Transglycosylase SLT domain protein n=1 Tax=Kingella denitrificans ATCC 33394 RepID=F0EYL2_9NEIS
Slt family transglycosylase {ECO:0000313|EMBL:KEK27256.1}; TaxID=332186 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella xiamenensis.;"
RTP_02272018_0_2um_scaffold_2047_2
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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415..894
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI000344B895
Uncharacterized protein {ECO:0000313|EMBL:KFI05384.1}; TaxID=760117 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;"
conserved hypothetical protein
RTP_02272018_0_2um_scaffold_2047_3
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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993..2615
DNA (1623bp) protein (541aa)
Bilirubin oxidase (EC:1.3.3.5)
Bilirubin oxidase {ECO:0000313|EMBL:ABM39790.1}; EC=1.3.3.5 {ECO:0000313|EMBL:ABM39790.1};; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Bilirubin oxidase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VVW2_POLNA
RTP_02272018_0_2um_scaffold_2047_4
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

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2726..3319
DNA (594bp) protein (198aa)
flagellar biosynthesis protein FlgB n=1 Tax=Methylotenera mobilis RepID=UPI000379C814
Putative uncharacterized protein {ECO:0000313|EMBL:EEF26647.1}; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
flagellar basal-body rod protein FlgB
RTP_02272018_0_2um_scaffold_2047_5
unknown

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3476..3739
DNA (264bp) protein (88aa)
Twin-arginine translocation pathway signal id=4961695 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RTP_02272018_0_2um_scaffold_2047_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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3807..4025
DNA (219bp) protein (73aa)
seg id=14426769 bin=bin1_lowGC species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
RTP_02272018_0_2um_scaffold_2047_7
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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4168..4548
DNA (381bp) protein (127aa)
Twin-arginine translocation pathway signal id=4961695 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=GWA2_Rhodocyclales_65_20_curated
RTP_02272018_0_2um_scaffold_2047_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4645..4875
DNA (231bp) protein (77aa)
Uncharacterized protein id=1351596 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rhodanese-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2047_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4913..5386
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) RepID=Q30QZ4_SULDN
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_2047_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5546..5968
DNA (423bp) protein (141aa)
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QG95_NITHX
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding {ECO:0000313|EMBL:ABE64752.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
RTP_02272018_0_2um_scaffold_2047_11
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6225..7829
DNA (1605bp) protein (535aa)
Unusual protein kinase-like id=4545541 bin=GWC2_Geobacteraceae_55_20 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
protein kinase-like protein
Tax=GWC2_Geobacteraceae_58_44_curated
RTP_02272018_0_2um_scaffold_2047_12
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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8092..8823
DNA (732bp) protein (244aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAH7_SPHTD
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein {ECO:0000313|EMBL:ACZ40820.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
Displaying 12 items

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