ggKbase home page

RTP_02272018_0_2um_scaffold_2435

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_2435_1
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..677)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QMX8_AZOSU
hypothetical protein
Tax=GWA2_Gallionellales_60_142_curated
RTP_02272018_0_2um_scaffold_2435_2
Osedax symbiont Rs2, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(892..1569)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Osedax symbiont Rs2 RepID=S6GN10_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPJ53082.1}; TaxID=1330035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont Rs2.;"
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase
RTP_02272018_0_2um_scaffold_2435_3
Osedax symbiont Rs2, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1566..1958)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Osedax symbiont Rs2 RepID=S6GP58_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPJ53083.1}; TaxID=1330035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont Rs2.;"
RTP_02272018_0_2um_scaffold_2435_4
Osedax symbiont Rs2, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2043..2381
DNA (339bp) protein (113aa)
Putative HTH-type transcriptional regulator n=1 Tax=Osedax symbiont Rs2 RepID=S6HZV2_9GAMM
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:EPJ53084.1}; TaxID=1330035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont Rs2.;"
MarR family transcriptional regulator
RTP_02272018_0_2um_scaffold_2435_5
unknown

Not on your lists

comp(2572..2934)
DNA (363bp) protein (121aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_2435_6

Not on your lists

comp(3103..4806)
DNA (1704bp) protein (568aa)
Putative transport protein (CPA2 family ) n=1 Tax=mine drainage metagenome RepID=E6PSE0_9ZZZZ
Putative transport protein (CPA2 family ) {ECO:0000313|EMBL:CBH97847.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
sodium/hydrogen exchanger
RTP_02272018_0_2um_scaffold_2435_7

Not on your lists

comp(5074..5535)
DNA (462bp) protein (154aa)
MarR family transcriptional regulator n=1 Tax=mine drainage metagenome RepID=T1CFD5_9ZZZZ
MarR family transcriptional regulator {ECO:0000313|EMBL:EQD80368.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transcriptional regulator, MarR family
RTP_02272018_0_2um_scaffold_2435_8

Not on your lists

comp(5528..5947)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1CD93_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD80367.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Polyketide cyclase / dehydrase and lipid transport
RTP_02272018_0_2um_scaffold_2435_9
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6187..6495
DNA (309bp) protein (103aa)
Integrase of ISARN110, IS91 family (N terminal part) n=1 Tax=mine drainage metagenome RepID=E6QW30_9ZZZZ
putative integrase
Tax=GWA2_Gallionellales_55_18_curated
RTP_02272018_0_2um_scaffold_2435_10
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7120..7401)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G6Z0_HERAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL62277.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
RTP_02272018_0_2um_scaffold_2435_11
unknown

Not on your lists

comp(7513..8142)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI000362B4DA
RTP_02272018_0_2um_scaffold_2435_12
unknown

Not on your lists

8286..8777
DNA (492bp) protein (164aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_2435_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9402..10190)
DNA (789bp) protein (263aa)
indole-3-glycerol phosphate synthase (EC:4.1.1.48)
indole-3-glycerol-phosphate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036EAA8C
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_2435_14
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10183..11202)
DNA (1020bp) protein (340aa)
Anthranilate phosphoribosyltransferase n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DND4_METS0
anthranilate phosphoribosyltransferase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_2435_15
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11199..11768)
DNA (570bp) protein (190aa)
Glutamine amidotransferase of anthranilate synthase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ANB6_9PROT
glutamine amidotransferase of anthranilate synthase
Glutamine amidotransferase of anthranilate synthase {ECO:0000313|EMBL:BAN36334.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_2435_16
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11770..13257)
DNA (1488bp) protein (496aa)
anthranilate synthase component I (EC:4.1.3.27)
anthranilate synthase subunit I n=1 Tax=Thiobacillus thioparus RepID=UPI0003802C3F
Tax=CG_Hydro_01
RTP_02272018_0_2um_scaffold_2435_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13430..13720)
DNA (291bp) protein (97aa)
cbbZ; phosphoglycolate phosphatase (EC:3.1.3.18)
Phosphoglycolate phosphatase {ECO:0000255|HAMAP-Rule:MF_00495}; Short=PGP {ECO:0000255|HAMAP-Rule:MF_00495};; Short=PGPase {ECO:0000255|HAMAP-Rule:MF_00495};; EC=3.1.3.18 {ECO:0000255|HAMAP-Rule:MF_00495};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Phosphoglycolate phosphatase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=GPH_THIDA
Displaying 17 items

View Taxonomy