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RTP_03222018_0_1um_scaffold_271

Search features with annotation key words

Displaying items 31-60 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_271_31
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37105..39684)
DNA (2580bp) protein (860aa)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase I n=1 Tax=Thiobacillus denitrificans RepID=UPI00036324E2
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_271_32
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39694..40194)
DNA (501bp) protein (167aa)
Smg protein; K03747 Smg protein id=12494386 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Smg protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_271_33
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40145..41107)
DNA (963bp) protein (321aa)
DNA-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F8EB0
SMF protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_271_34
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41206..42402)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361A737
peptidoglycan-binding LysM-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_271_35
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42756..43289
DNA (534bp) protein (178aa)
peptide deformylase (EC:3.5.1.88)
Peptide deformylase id=1307786 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_271_36
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43302..44222
DNA (921bp) protein (307aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9)
methionyl-tRNA formyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D725F
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_271_37
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44422..45693
DNA (1272bp) protein (424aa)
16S rRNA methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI000363901C
Fmu, rRNA SAM-dependent methyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_271_38
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45659..46288
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035F181C
proline rich signal peptide protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_271_39
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46288..48420
DNA (2133bp) protein (711aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
Multi-sensor Signal Transduction Histidine Kinase id=1356550 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_271_40
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48417..49127
DNA (711bp) protein (237aa)
Two Component Transcriptional Regulator, Fis family id=1356551 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Fis family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_271_41
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49111..49578
DNA (468bp) protein (156aa)
two component Fis family transcriptional regulator id=12496064 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Fis family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_271_42
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49689..50861
DNA (1173bp) protein (391aa)
Trk system potassium uptake protein TrkA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SMR8_THIDA
trkA; potassium transporter peripheral membrane component
Trk system potassium uptake protein TrkA {ECO:0000313|EMBL:AAZ95973.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_271_43
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50870..51034
DNA (165bp) protein (55aa)
Trk system potassium uptake protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SMR7_THIDA
trk system potassium uptake membrane protein TrkH
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_271_44
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51123..51422
DNA (300bp) protein (100aa)
Trk system potassium uptake protein id=1354752 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
trk system potassium uptake membrane protein TrkH
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_271_45
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51717..53174
DNA (1458bp) protein (486aa)
Trk system potassium uptake protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SMR6_THIDA
trk system potassium uptake membrane protein
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_271_46
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53174..53524
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D1484
TPR repeat-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_271_47
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53544..53828
DNA (285bp) protein (95aa)
hypothetical protein id=12494846 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Probable Fe(2+)-trafficking protein {ECO:0000255|HAMAP-Rule:MF_00686}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_271_48
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53891..54592)
DNA (702bp) protein (234aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00037066E2
phosphate uptake regulator, PhoU
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_271_49
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54662..55075)
DNA (414bp) protein (138aa)
Putative uncharacterized protein id=1354757 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_271_50
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55072..56079)
DNA (1008bp) protein (336aa)
thiamine monophosphate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000381CA5F
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_271_51
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56076..56951)
DNA (876bp) protein (292aa)
ATPase AAA n=1 Tax=Thiobacillus thioparus RepID=UPI0003801883
ATPase
ATPase {ECO:0000313|EMBL:AAZ95981.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_271_52
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57070..57777)
DNA (708bp) protein (236aa)
Cyclic nucleotide-binding domain protein id=1312395 bin=GWE1_T_denit_62_9 species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative Crp/Fnr family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_271_53
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58264..59523
DNA (1260bp) protein (420aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SK0_RHOFD
PAS/PAC sensor hybrid histidine kinase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_271_54
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59471..60007
DNA (537bp) protein (179aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AFA6_9PROT
PAS/PAC sensor hybrid histidine kinase
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:BAN34561.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_03222018_0_1um_scaffold_271_55
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60007..60936
DNA (930bp) protein (310aa)
Response regulator receiver modulated diguanylate cyclase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SK1_RHOFD
diguanylate cyclase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_271_56
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61017..61850
DNA (834bp) protein (278aa)
Putative PAS/PAC sensor protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GLI1_NITSI
histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
RTP_03222018_0_1um_scaffold_271_57
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61860..62603
DNA (744bp) protein (248aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B1J2_9PROT
Crp/Fnr family transcriptional regulator
Tax=RBG_16_Gamma2_65_34_curated
RTP_03222018_0_1um_scaffold_271_58
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62736..63464)
DNA (729bp) protein (243aa)
Transcriptional regulator, Crp/Fnr family id=1312394 bin=GWE1_T_denit_62_9 species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Crp/Fnr family transcriptional regulator
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
RTP_03222018_0_1um_scaffold_271_59
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63742..64320
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47EA0_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP49234.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_03222018_0_1um_scaffold_271_60
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64457..64654
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47EA2_DECAR
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
Displaying items 31-60 of 80 in total

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