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RTP_03222018_0_1um_scaffold_271

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_271_1
unknown

Not on your lists

3..335
DNA (333bp) protein (111aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_271_2
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

381..581
DNA (201bp) protein (67aa)
hypothetical protein
Tax=CG_Beta_01
RTP_03222018_0_1um_scaffold_271_3
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

578..820
DNA (243bp) protein (81aa)
Uncharacterized protein {ECO:0000313|EMBL:KFB69373.1}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
RTP_03222018_0_1um_scaffold_271_4
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1258..1551
DNA (294bp) protein (98aa)
Transposase IS3/IS911 family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXY0_9GAMM
transposase IS3/IS911 family protein
Transposase IS3 {ECO:0000313|EMBL:EPX97879.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
RTP_03222018_0_1um_scaffold_271_5
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1548..2405
DNA (858bp) protein (286aa)
Transposase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WPU0_9BURK
Transposase {ECO:0000313|EMBL:EHR72088.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
integrase catalytic subunit
RTP_03222018_0_1um_scaffold_271_6
unknown

Not on your lists

comp(2402..2707)
DNA (306bp) protein (102aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_271_7
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2694..5855)
DNA (3162bp) protein (1054aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXP5_RAMTT
Uncharacterized protein {ECO:0000313|EMBL:AEG91848.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
hypothetical protein
RTP_03222018_0_1um_scaffold_271_8
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5842..6747)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXP4_RAMTT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_03222018_0_1um_scaffold_271_9
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6846..7313)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3J959_9ALTE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_03222018_0_1um_scaffold_271_10
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7459..8013)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXP2_RAMTT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_03222018_0_1um_scaffold_271_11
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8195..9412)
DNA (1218bp) protein (406aa)
Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDS3_GEOUR
response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor
Tax=BJP_IG2103_Dechloromonas_63_51
RTP_03222018_0_1um_scaffold_271_12
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9443..10204)
DNA (762bp) protein (254aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJT8_9PROT
response regulator receiver/GGDEF/EAL domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
RTP_03222018_0_1um_scaffold_271_13
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10208..11383)
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036A3834
response regulator receiver protein
Tax=CG_Rhodocyc_01
RTP_03222018_0_1um_scaffold_271_14
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11399..12598)
DNA (1200bp) protein (400aa)
hisitidine kinase n=1 Tax=Azoarcus toluclasticus RepID=UPI00036C2D98
response regulator
Probable response regulator {ECO:0000313|EMBL:CAI09581.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
RTP_03222018_0_1um_scaffold_271_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12627..15452)
DNA (2826bp) protein (942aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656, ECO:0000313|EMBL:KIO48904.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
multi-sensor hybrid histidine kinase
RTP_03222018_0_1um_scaffold_271_16
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15472..16320)
DNA (849bp) protein (283aa)
ABC-type phosphate/phosphonate transport system, periplasmic component n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQK5_9BURK
ABC-type phosphate/phosphonate transport system, periplasmic component
ABC-type phosphate/phosphonate transport system, periplasmic component {ECO:0000313|EMBL:BAO29624.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
RTP_03222018_0_1um_scaffold_271_17
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16584..16886)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q11ZX4_POLSJ
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_03222018_0_1um_scaffold_271_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17180..17803
DNA (624bp) protein (208aa)
Integrase family protein id=1317126 bin=GWE1_T_denit_62_9 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
integrase family protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_271_19
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17977..18603
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000378CD8C
Uncharacterized protein {ECO:0000313|EMBL:AKH37248.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
transposase IS4 family protein
RTP_03222018_0_1um_scaffold_271_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19315..19782
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036EB8AA
Uncharacterized protein {ECO:0000313|EMBL:EYR84215.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
RTP_03222018_0_1um_scaffold_271_21
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19779..20060
DNA (282bp) protein (94aa)
Addiction module antitoxin n=1 Tax=Burkholderia sp. SJ98 RepID=K8RGR2_9BURK
addiction module antitoxin
Tax=GWA2_Gallionellales_54_124_curated
RTP_03222018_0_1um_scaffold_271_22
unknown

Not on your lists

comp(20370..20555)
DNA (186bp) protein (62aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_271_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20579..21196)
DNA (618bp) protein (206aa)
Possible Transcriptional Regulator, TetR family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIZ8_THIDA
TetR family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_271_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21342..22565
DNA (1224bp) protein (408aa)
hemolysin D n=1 Tax=Thiobacillus denitrificans RepID=UPI00036EC01E
secretion protein HlyD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_271_25
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22577..25744
DNA (3168bp) protein (1056aa)
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Azoarcus sp. KH32C RepID=H0PS59_9RHOO
transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
Tax=BJP_IG2103_Rhodocyclales_63_50
RTP_03222018_0_1um_scaffold_271_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25741..27138
DNA (1398bp) protein (466aa)
multidrug transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F19BA
RND efflux system outer membrane lipoprotein NodT
RND efflux system outer membrane lipoprotein NodT {ECO:0000313|EMBL:AAZ97369.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_271_27
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27549..29663
DNA (2115bp) protein (705aa)
hypothetical protein n=1 Tax=Serratia marcescens RepID=UPI00035E28C2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGD54924.1}; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (Pseudomonas pseudomallei).;"
RTP_03222018_0_1um_scaffold_271_28
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29768..31363
DNA (1596bp) protein (532aa)
Uncharacterized protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AIB8_COLFT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK60701.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
RTP_03222018_0_1um_scaffold_271_29
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31712..36040
DNA (4329bp) protein (1443aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X729_OCHA4
Uncharacterized protein {ECO:0000313|EMBL:ABS17033.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
hypothetical protein
RTP_03222018_0_1um_scaffold_271_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36737..37093)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000370DB78
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 80 in total

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