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RTP_03222018_0_1um_scaffold_413

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Displaying items 1-30 of 127 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_413_1
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(292..1203)
DNA (912bp) protein (304aa)
LysR family transcriptional regulator id=12496248 bin=THIO_MID species=unknown genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO34745.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
LysR family transcriptional regulator
RTP_03222018_0_1um_scaffold_413_2
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1462..2883
DNA (1422bp) protein (474aa)
rbcL; Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (RuBisCO large subunit) (EC:4.1.1.39) id=12496249 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Ribulose bisphosphate carboxylase large chain {ECO:0000256|HAMAP-Rule:MF_01338}; Short=RuBisCO large subunit {ECO:0000256|HAMAP-Rule:MF_01338};; EC=4.1.1.39 {ECO:0000256|HAMAP-Rule:MF_01338};; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
ribulose 1,5-bisphosphate carboxylase, large subunit
RTP_03222018_0_1um_scaffold_413_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2998..3324
DNA (327bp) protein (109aa)
ribulose-bisphosphate carboxylase (EC:4.1.1.39); K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] id=12496250 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Ribulose 1,5-bisphosphate carboxylase small subunit {ECO:0000313|EMBL:ABE64928.1}; EC=4.1.1.39 {ECO:0000313|EMBL:ABE64928.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
ribulose bisphosphate carboxylase small subunit
RTP_03222018_0_1um_scaffold_413_4
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3553..6012
DNA (2460bp) protein (820aa)
carboxysome shell protein id=12496251 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
carboxysome shell protein
Carboxysome shell protein CsoS2 {ECO:0000313|EMBL:ABA05244.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
RTP_03222018_0_1um_scaffold_413_5
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6023..7510
DNA (1488bp) protein (496aa)
carboxysome shell carbonic anhydrase id=12496252 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
carboxysome shell carbonic anhydrase
Carboxysome shell carbonic anhydrase {ECO:0000313|EMBL:ADG29531.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
RTP_03222018_0_1um_scaffold_413_6
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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7537..7794
DNA (258bp) protein (86aa)
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AHV7_NITEC
ethanolamine utilization protein EutN/carboxysome structural protein Ccml
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml {ECO:0000313|EMBL:ABI59075.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
RTP_03222018_0_1um_scaffold_413_7
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7808..8053
DNA (246bp) protein (82aa)
Carboxysome polypeptide n=2 Tax=Thiomonas RepID=D6CQK5_THIA3
Carboxysome polypeptide
Carboxysome peptide B {ECO:0000313|EMBL:ADG29533.1}; Carboxysome polypeptide {ECO:0000313|EMBL:AAD02450.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
RTP_03222018_0_1um_scaffold_413_8
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8173..8469
DNA (297bp) protein (99aa)
microcompartments protein id=12496255 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
csoS1a; Major carboxysome shell protein
Major carboxysome shell protein {ECO:0000313|EMBL:CAZ86897.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
RTP_03222018_0_1um_scaffold_413_9
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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8528..8824
DNA (297bp) protein (99aa)
Microcompartments protein n=2 Tax=root RepID=G0JL91_9GAMM
carboxysome shell protein CsoS1
Microcompartments protein {ECO:0000313|EMBL:AEM49206.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
RTP_03222018_0_1um_scaffold_413_10
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8882..9220
DNA (339bp) protein (113aa)
Carboxysome structural polypeptide n=2 Tax=Thiomonas RepID=D6CQK8_THIA3
microcompartments protein
Carboxysome structural polypeptide {ECO:0000313|EMBL:CAZ86899.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
RTP_03222018_0_1um_scaffold_413_11
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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9232..9669
DNA (438bp) protein (146aa)
ferritin Dps family protein; K03594 bacterioferritin id=12496256 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Bfr, Bacterioferritin {ECO:0000313|EMBL:KFZ88939.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
Ferritin, Dps family protein
RTP_03222018_0_1um_scaffold_413_12
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9662..9931
DNA (270bp) protein (90aa)
putative Pterin-4a-carbinolamine dehydratase (EC:4.2.1.96)
Putative Pterin-4a-carbinolamine dehydratase {ECO:0000313|EMBL:CAZ86901.1}; EC=4.2.1.96 {ECO:0000313|EMBL:CAZ86901.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
hypothetical protein id=12496257 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
RTP_03222018_0_1um_scaffold_413_13
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9934..10569
DNA (636bp) protein (212aa)
Cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein id=12496258 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative Cobyrinic acid a,c-diamide synthase cbiA
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ADG29539.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
RTP_03222018_0_1um_scaffold_413_14
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10566..10880
DNA (315bp) protein (105aa)
Putative histone H1 n=1 Tax=Pinus pinaster RepID=Q84L42_PINPS
poly(hydroxyalkanoate) granule-associated protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
RTP_03222018_0_1um_scaffold_413_15
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10920..11837
DNA (918bp) protein (306aa)
CbbQ/NirQ/NorQ domain-containing protein; K04748 nitric oxide reductase NorQ protein id=12496260 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
cbbQ1; post-translational RubisCO activator CbbQ
CbbQ/NirQ/NorQ domain protein {ECO:0000313|EMBL:ADG29541.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
RTP_03222018_0_1um_scaffold_413_16
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11889..14318
DNA (2430bp) protein (810aa)
von Willebrand factor type A n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X344_THIK1
hypothetical protein
von Willebrand factor type A {ECO:0000313|EMBL:ADG29542.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
RTP_03222018_0_1um_scaffold_413_17
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14330..14968
DNA (639bp) protein (213aa)
hypothetical protein id=12496262 bin=THIO_MID species=Nitrobacter sp. Nb-311A genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05233.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
RTP_03222018_0_1um_scaffold_413_18
Cellulomonas bogoriensis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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14970..15986
DNA (1017bp) protein (339aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1386082 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas bogoriensis 69B4 = DSM 16987.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QLI4_AZOSU
Sua5/YciO/YrdC/YwlC family protein
RTP_03222018_0_1um_scaffold_413_19
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16328..18088)
DNA (1761bp) protein (587aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00035F2D43
Inorganic anion transporter, SulP family {ECO:0000313|EMBL:ETH91872.1}; TaxID=1331279 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis STO1-CHOC-0019.;"
sulfate transporter
RTP_03222018_0_1um_scaffold_413_20
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18637..20709)
DNA (2073bp) protein (691aa)
sulfate transporter id=12496269 bin=THIO_MID species=Thioalkalivibrio sp. HL-Eb18 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sulfate transporter
Sulphate transporter {ECO:0000313|EMBL:ADC71500.1}; TaxID=396595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
RTP_03222018_0_1um_scaffold_413_21
unknown

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comp(20906..21496)
DNA (591bp) protein (197aa)
id=12496270 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
RTP_03222018_0_1um_scaffold_413_22
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21704..23170
DNA (1467bp) protein (489aa)
integral membrane sensor signal transduction histidine kinase id=12496271 bin=THIO_MID species=Thioalkalivibrio sp. AKL11 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
integral membrane sensor signal transduction histidine kinase
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
RTP_03222018_0_1um_scaffold_413_23
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23167..24537
DNA (1371bp) protein (457aa)
Fis family transcriptional regulator id=12496272 bin=THIO_MID species=Thioalkalivibrio sp. ALE12 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Fis family transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ADC71503.1}; TaxID=396595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
RTP_03222018_0_1um_scaffold_413_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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24574..24945
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C1680
thioredoxin-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_413_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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24938..25393
DNA (456bp) protein (152aa)
Putative uncharacterized protein id=1329451 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_413_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(25365..26270)
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family id=1329452 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
LysR family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_413_27
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26387..26758
DNA (372bp) protein (124aa)
Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RNZ0_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP49589.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_03222018_0_1um_scaffold_413_28
unknown

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26755..26880
DNA (126bp) protein (42aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_413_29
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26908..27417
DNA (510bp) protein (170aa)
UPF0114 protein ThimaDRAFT_0123 n=1 Tax=Thiocapsa marina 5811 RepID=F9U5C2_9GAMM
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_57_12_curated
RTP_03222018_0_1um_scaffold_413_30
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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27442..28050
DNA (609bp) protein (203aa)
Uncharacterized protein n=2 Tax=Thauera RepID=N6YI47_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EXU78490.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
Displaying items 1-30 of 127 in total

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