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RTP_03222018_0_1um_scaffold_414

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_414_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..703)
DNA (702bp) protein (234aa)
adenylylsulfate reductase subunit alpha (EC:1.8.99.2)
Adenylylsulfate reductase, alpha subunit n=2 Tax=Thiobacillus denitrificans RepID=Q3SKF6_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_414_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(731..1204)
DNA (474bp) protein (158aa)
adenylylsulfate reductase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI000378694E
aprB; adenylylsulfate reductase subunit beta
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_414_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1398..2615)
DNA (1218bp) protein (406aa)
sat; sulfate adenylyltransferase (EC:2.7.7.4)
sulfate adenylyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AE62D
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_414_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2777..3190)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037EF174
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_414_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3313..4023)
DNA (711bp) protein (237aa)
glutamine amidotransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00035E22D2
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_414_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4025..4669
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003647CF7
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_414_7
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5084..6361)
DNA (1278bp) protein (426aa)
restriction endonuclease or methylase n=1 Tax=Methyloversatilis sp. NVD RepID=UPI00036F69CF
Prophage Lp2 protein 6 {ECO:0000313|EMBL:GAE53897.1}; TaxID=1418095 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni MAFF 301420.;"
prophage Lp2 protein 6
RTP_03222018_0_1um_scaffold_414_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6691..7497)
DNA (807bp) protein (269aa)
GTP cyclohydrolase (EC:3.5.4.16)
GTP cyclohydrolase FolE2 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=GCH4_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_414_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7618..9474)
DNA (1857bp) protein (619aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036A610D
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_414_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9475..10362)
DNA (888bp) protein (296aa)
farnesyl-diphosphate synthase (EC:2.5.1.10)
geranyltranstransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003789D6B
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_414_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10355..10597)
DNA (243bp) protein (81aa)
exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
exodeoxyribonuclease n=1 Tax=Thiobacillus denitrificans RepID=UPI000377587F
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_414_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10849..11715
DNA (867bp) protein (289aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037531B7
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_414_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11743..12111
DNA (369bp) protein (123aa)
Putative uncharacterized protein id=1362778 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_414_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12183..12497
DNA (315bp) protein (105aa)
Carbonic anhydrase, eukaryotic id=1362777 bin=GWE1_T_denit_62_9 species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_414_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12492..13241)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037092A4
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_414_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13238..14101)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361AD1D
thioredoxin protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_414_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14103..15062)
DNA (960bp) protein (320aa)
prolyl aminopeptidase (EC:3.4.11.5)
proline iminopeptidase n=1 Tax=Thiobacillus thioparus RepID=UPI00036120C2
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_414_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15309..15698
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C6310
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_414_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15851..16885
DNA (1035bp) protein (345aa)
histidine kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00035F2F6C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_414_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16912..17175
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F2F3E
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_414_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17190..19397
DNA (2208bp) protein (736aa)
diguanylate cyclase/phosphodiesterase id=12495183 bin=THIO_HI species=unknown genus=Methylotenera taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
diguanylate cyclase/phosphodiesterase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_414_22

Not on your lists

comp(19481..22138)
DNA (2658bp) protein (886aa)
Aconitate hydratase (Citrate hydro-lyase) (Aconitase) {ECO:0000313|EMBL:CBI09861.1}; EC=4.2.1.3 {ECO:0000313|EMBL:CBI09861.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
acnA; aconitate hydratase (EC:4.2.1.3)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F58A9
RTP_03222018_0_1um_scaffold_414_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22218..22568)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D425C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96845.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_414_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22578..24083)
DNA (1506bp) protein (502aa)
lysyl-tRNA synthetase, class-2; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] id=12494622 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
lysyl-tRNA synthetase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_414_25
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24094..24525)
DNA (432bp) protein (144aa)
Ribonuclease VapC n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKD8_THIDA
hypothetical protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_03222018_0_1um_scaffold_414_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24526..24771)
DNA (246bp) protein (82aa)
prevent-host-death protein id=12494620 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
prevent-host-death protein
Prevent-host-death protein {ECO:0000313|EMBL:AAZ96848.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_414_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24879..26675
DNA (1797bp) protein (599aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Thiobacillus thioparus RepID=UPI00036ECAF1
ATP-dependent DNA helicase RecQ
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_414_28
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26696..26905)
DNA (210bp) protein (70aa)
antitoxin n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000311A969
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAO30726.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
RTP_03222018_0_1um_scaffold_414_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27033..28082)
DNA (1050bp) protein (350aa)
peptide chain release factor 2 n=1 Tax=Thiobacillus thioparus RepID=UPI00037E3C12
peptide chain release factor 2
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_414_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28153..29538)
DNA (1386bp) protein (462aa)
MgtC family protein id=1345797 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
MgtC family protein
MgtC family protein {ECO:0000313|EMBL:AAZ96875.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 70 in total

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