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RTP_03222018_0_1um_scaffold_1060

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_1060_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(531..833)
DNA (303bp) protein (101aa)
Putative uncharacterized protein id=1326628 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1060_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(931..2385)
DNA (1455bp) protein (485aa)
nuoN; NADH dehydrogenase subunit N (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit N id=1326629 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1060_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2396..3880)
DNA (1485bp) protein (495aa)
nuoM; NADH dehydrogenase subunit M (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit M n=1 Tax=Thiobacillus denitrificans RepID=UPI000368D282
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1060_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3907..5901)
DNA (1995bp) protein (665aa)
nuoL; NADH dehydrogenase I subunit L (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit L n=1 Tax=Thiobacillus thioparus RepID=UPI000376A927
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1060_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5901..6206)
DNA (306bp) protein (102aa)
nuoK; NADH dehydrogenase subunit K (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit K id=1326632 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1060_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6203..6841)
DNA (639bp) protein (213aa)
nuoJ; NADH dehydrogenase I subunit J (EC:1.6.5.3)
NADH dehydrogenase I chain J id=1326633 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1060_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6851..7339)
DNA (489bp) protein (163aa)
NADH dehydrogenase subunit I (EC:1.6.5.3); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] id=12494882 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
nuoI; NADH dehydrogenase subunit I (EC:1.6.5.3)
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1060_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7347..8363)
DNA (1017bp) protein (339aa)
nuoH; NADH dehydrogenase I subunit H (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit H id=1326635 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1060_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8363..10717)
DNA (2355bp) protein (785aa)
nuoG; NADH dehydrogenase subunit G (EC:1.6.5.3)
NADH-quinone oxidoreductase, chain G id=1326636 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1060_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10720..12012)
DNA (1293bp) protein (431aa)
nuoF; NADH-quinone oxidoreductase subunit F (EC:1.6.5.3)
NADH-quinone oxidoreductase, chain F {ECO:0000313|EMBL:AAZ97100.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AAZ97100.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
NADH dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI000371CBDB
RTP_03222018_0_1um_scaffold_1060_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12026..12529)
DNA (504bp) protein (168aa)
nuoE; NADH dehydrogenase subunit E (EC:1.6.5.3)
NADH dehydrogenase subunit E n=1 Tax=Thiobacillus thioparus RepID=UPI00036FF2DD
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1060_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12529..13782)
DNA (1254bp) protein (418aa)
nuoD; NADH dehydrogenase subunit D (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit D id=1326639 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1060_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13782..14396)
DNA (615bp) protein (205aa)
nuoC; NADH dehydrogenase subunit C (EC:1.6.5.3)
NADH dehydrogenase subunit C n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A6749
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1060_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14406..14882)
DNA (477bp) protein (159aa)
nuoB; NADH dehydrogenase subunit B (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit B 2 id=1326641 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1060_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14905..15261)
DNA (357bp) protein (119aa)
nuoA; NADH dehydrogenase I subunit A (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit A n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CFBB6
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1060_trna_1
unknown

Not on your lists

comp(15426..15507)
DNA (82bp)
transferRNA Leu
RTP_03222018_0_1um_scaffold_1060_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15960..16706)
DNA (747bp) protein (249aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase id=1326644 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1060_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16790..17575)
DNA (786bp) protein (262aa)
phosphate ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364B153
phosphate transport system permease 1
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 18 items

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