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RTP_03222018_0_1um_scaffold_1242

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_1242_1
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1066)
DNA (1065bp) protein (355aa)
hypothetical protein, partial n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B19E8
methyl-accepting chemotaxis sensory transducer
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_03222018_0_1um_scaffold_1242_2
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1372..3072)
DNA (1701bp) protein (567aa)
Chemotaxis sensory transducer n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIF3_THIDA
methyl-accepting chemotaxis sensory transducer
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_03222018_0_1um_scaffold_1242_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3123..3617)
DNA (495bp) protein (165aa)
purine-binding chemotaxis protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000366DA2B
chemotaxis protein CheW
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1242_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3674..5710)
DNA (2037bp) protein (679aa)
signal transduction histidine kinase CheA-like protein; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] id=12493525 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
signal transduction histidine kinase CheA-like protein
RTP_03222018_0_1um_scaffold_1242_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5755..6072)
DNA (318bp) protein (106aa)
chemotaxis protein CheY n=1 Tax=Thiobacillus denitrificans RepID=UPI0003695FB7
response regulator receiver domain-containing protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1242_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6179..6739)
DNA (561bp) protein (187aa)
Putative uncharacterized protein id=1344989 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1242_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6748..7650)
DNA (903bp) protein (301aa)
Flagellin, flagellar hook-associated protein 3 FlgL n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIE8_THIDA
flgL; flagellar hook-associated protein FlgL
Flagellin, flagellar hook-associated protein 3 FlgL {ECO:0000313|EMBL:AAZ97580.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_1242_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7663..9303)
DNA (1641bp) protein (547aa)
Flagellar hook-associated protein id=1344991 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flgK; flagellar hook-associated protein FlgK
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1242_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9393..10349)
DNA (957bp) protein (319aa)
Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase id=1344992 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1242_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10349..11446)
DNA (1098bp) protein (366aa)
Flagellar P-ring protein id=1344993 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flgI; flagellar basal body P-ring biosynthesis protein FlgA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1242_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11458..12027)
DNA (570bp) protein (190aa)
Flagellar L-ring protein id=1344994 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar L-ring protein FlgH
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1242_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12055..12837)
DNA (783bp) protein (261aa)
flagellar basal body rod protein FlgG n=1 Tax=Thiobacillus denitrificans RepID=UPI000378F852
flagellar basal body rod protein FlgG
Flagellar basal body rod protein FlgG {ECO:0000313|EMBL:AAZ97585.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_1242_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12864..13607)
DNA (744bp) protein (248aa)
flagellar basal body rod protein FlgF n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FD335
flgF; flagellar basal body rod protein FlgF
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1242_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13640..14845)
DNA (1206bp) protein (402aa)
Flagellar hook protein FlgE n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIE1_THIDA
flgE; flagellar hook protein FlgE
Flagellar hook protein FlgE {ECO:0000313|EMBL:AAZ97587.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_1242_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14902..15567)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036BBA3E
flgD; flagellar basal body rod modification protein
Flagellar basal-body rod modification protein FlgD {ECO:0000313|EMBL:AAZ97588.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_1242_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15596..16000)
DNA (405bp) protein (135aa)
Flagellar basal-body rod protein FlgC id=1359589 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar basal body rod protein FlgC
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1242_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16025..16432)
DNA (408bp) protein (136aa)
Flagellar basal body rod protein FlgB id=1359590 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar basal-body rod protein FlgB
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1242_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16616..17329
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036511CB
flgA; flagellar basal body P-ring biosynthesis protein FlgA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1242_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17428..17724
DNA (297bp) protein (99aa)
Putative Anti-Sigma-28 factor, FlgM id=1359592 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
anti-sigma-28 factor, FlgM
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1242_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17711..18106
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036260D3
flagella synthesis protein FlgN
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1242_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18140..19972)
DNA (1833bp) protein (611aa)
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000255|HAMAP-Rule:MF_01102}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000255|HAMAP-Rule:MF_01102};; Includes:; tRNA (mnm(5)s(2)U34)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01102}; EC=2.1.1.61 {ECO:0000255|HAMAP-Rule:MF_01102};; Includes:; FAD-dependent cmnm(5)s(2)U34 oxidoreductase {ECO:0000255|HAMAP-Rule:MF_01102}; EC=1.5.-.- {ECO:0000255|HAMAP-Rule:MF_01102};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FAD-dependent cmnm(5)s(2)U34 oxidoreductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037927C2
mnmC; 5-methylaminomethyl-2-thiouridine methyltransferase
RTP_03222018_0_1um_scaffold_1242_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20005..21174
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000360E6B1
secretion protein HlyD
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1242_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21171..21842
DNA (672bp) protein (224aa)
ABC transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00035E0465
ABC transporter-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1242_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21839..23041
DNA (1203bp) protein (401aa)
peptide ABC transporter permease n=1 Tax=Thiobacillus thioparus RepID=UPI00036B9511
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1242_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23038..24237
DNA (1200bp) protein (400aa)
peptide ABC transporter permease n=1 Tax=Thiobacillus thioparus RepID=UPI0003623CEB
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1242_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24658..25038
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000366BAA3
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1242_27
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25206..27626
DNA (2421bp) protein (807aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
Multi-sensor hybrid histidine kinase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E640_9GAMM
signal transduction histidine kinase
RTP_03222018_0_1um_scaffold_1242_28
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27628..28557
DNA (930bp) protein (310aa)
Two-component response regulator with diguanylate cyclase domain n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z2W9_AZOL4
Two-component response regulator with diguanylate cyclase domain
Two-component response regulator with diguanylate cyclase domain {ECO:0000313|EMBL:CBS87717.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
RTP_03222018_0_1um_scaffold_1242_29
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28576..29664
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI000368AA67
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG02095.1}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
RTP_03222018_0_1um_scaffold_1242_30
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29743..31083
DNA (1341bp) protein (447aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47AE5_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ48186.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
Displaying items 1-30 of 34 in total

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