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RTP_03222018_0_2um_scaffold_1208

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_1208_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(222..686)
DNA (465bp) protein (155aa)
translation initiation factor 3; K02520 translation initiation factor IF-3 id=12495543 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
translation initiation factor 3
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1208_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(884..2791)
DNA (1908bp) protein (636aa)
Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3)
threonyl-tRNA synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003775998
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1208_trna_1
unknown

Not on your lists

comp(2990..3063)
DNA (74bp)
transferRNA Val
RTP_03222018_0_2um_scaffold_1208_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3131..3544)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000372D354
2'-5' RNA ligase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1208_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3666..4148)
DNA (483bp) protein (161aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI000361FDCA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1208_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4141..4842)
DNA (702bp) protein (234aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037A9EDA
4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1208_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4839..6992)
DNA (2154bp) protein (718aa)
cell division protein FtsK n=1 Tax=Thiobacillus denitrificans RepID=UPI000376A5D2
DNA translocase FtsK
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1208_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7156..8118
DNA (963bp) protein (321aa)
thioredoxin reductase (EC:1.8.1.9)
Thioredoxin reductase id=1348793 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1208_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8155..8811
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003773CEE
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1208_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8824..9279
DNA (456bp) protein (152aa)
peroxiredoxin n=1 Tax=Thiobacillus thioparus RepID=UPI00037A08DE
bacterioferritin comigratory protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1208_10
unknown

Not on your lists

comp(9717..10217)
DNA (501bp) protein (167aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_1208_11
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10832..13675)
DNA (2844bp) protein (948aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003676B1F
diguanylate cyclase/phosphodiesterase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_1208_12
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13672..14502)
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WM94_9BURK
phosphate/phosphonate ABC transporter membrane protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_1208_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14748..16724)
DNA (1977bp) protein (659aa)
helicase n=1 Tax=Thiobacillus thioparus RepID=UPI0003725147
helicase c2
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1208_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16846..17700
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BA1C1
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1208_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17697..19967
DNA (2271bp) protein (757aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E9BCB
diguanylate cyclase/phosphodiesterase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1208_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19979..21643)
DNA (1665bp) protein (555aa)
2-octaprenylphenol hydroxylase (EC:1.14.13.-)
ubiquinone biosynthesis protein UbiB n=1 Tax=Thiobacillus thioparus RepID=UPI0003659501
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1208_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21712..21888)
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003683F5E
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1208_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21827..22249)
DNA (423bp) protein (141aa)
Putative uncharacterized protein id=1352758 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1208_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22324..22806
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A7DBC
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1208_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22908..23915
DNA (1008bp) protein (336aa)
iron deficiency-induced protein A n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C8C72
ABC transporter iron binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1208_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23951..25630
DNA (1680bp) protein (560aa)
FeT family ferric iron ABC transporter permease n=1 Tax=Thiobacillus denitrificans RepID=UPI000382426C
iron transport system permease
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1208_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25623..26690
DNA (1068bp) protein (356aa)
cell division protein FtsE n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D3891
transport system ATPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1208_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26702..29263
DNA (2562bp) protein (854aa)
multi-sensor hybrid histidine kinase (EC:2.7.3.-)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DF613
Multi-sensor Hybrid Histidine Kinase {ECO:0000313|EMBL:AAZ96940.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_1208_24
unknown

Not on your lists

29336..29491
DNA (156bp) protein (52aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_1208_25
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29930..31759)
DNA (1830bp) protein (610aa)
von Willebrand factor type A n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B0T4_9PROT
von Willebrand factor type A
Tax=CG_Beta_01
RTP_03222018_0_2um_scaffold_1208_26
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31772..32800)
DNA (1029bp) protein (343aa)
Iron-sulfur cluster-binding protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AER8_9PROT
iron-sulfur cluster-binding protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
RTP_03222018_0_2um_scaffold_1208_27
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32790..33200)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B0U2_9PROT
Cytochrome C oxidase subunit III {ECO:0000313|EMBL:GAO35218.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_1208_28
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33181..34011)
DNA (831bp) protein (277aa)
ATPase AAA n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AB45_9PROT
ATPase AAA {ECO:0000313|EMBL:GAO35217.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
cbbQ; ATPase AAA
RTP_03222018_0_2um_scaffold_1208_29
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34082..35458)
DNA (1377bp) protein (459aa)
Nitric oxide reductase large subunit n=3 Tax=Proteobacteria RepID=G8QI41_AZOSU
nitric oxide reductase large subunit
Nitric oxide reductase large subunit {ECO:0000313|EMBL:AEV27444.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Displaying items 1-30 of 75 in total

View Taxonomy