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RTP_03222018_0_2um_scaffold_1464

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_1464_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..938
DNA (936bp) protein (312aa)
formate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00037EACDD
DMSO reductase subunit A
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1464_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

998..1693
DNA (696bp) protein (232aa)
ferredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DF459
DMSO reductase subunit B
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1464_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1838..2776
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000370F72C
DMSO reductase subunit C
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1464_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2883..3212
DNA (330bp) protein (110aa)
rhodanese-like protein id=12497718 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rhodanese-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1464_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3342..3569
DNA (228bp) protein (76aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SL89_THIDA
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1464_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3659..4168
DNA (510bp) protein (170aa)
NADH dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00037CBDE8
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1464_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4396..5670
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037DFEF4
long-chain fatty acid transport protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1464_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6053..8845)
DNA (2793bp) protein (931aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9)
valyl-tRNA synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036B0708
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1464_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8962..9486)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036508BC
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1464_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9497..9925)
DNA (429bp) protein (143aa)
DNA polymerase III subunit chi (EC:2.7.7.7)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B0C38
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1464_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9922..10557)
DNA (636bp) protein (212aa)
leucyl aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase id=1341763 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1464_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10559..11344)
DNA (786bp) protein (262aa)
leucyl aminopeptidase (EC:3.4.11.1)
multifunctional aminopeptidase A n=1 Tax=Thiobacillus thioparus RepID=UPI000370ADF5
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1464_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11453..12532
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AD778
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96534.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_1464_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12529..13602
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000364B141
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96535.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_1464_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13668..14393
DNA (726bp) protein (242aa)
anaerobic ribonucleoside triphosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003747F3C
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1464_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14397..14867)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C3A5A
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1464_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14864..15982)
DNA (1119bp) protein (373aa)
cupin n=1 Tax=Thiobacillus thioparus RepID=UPI000366EC5F
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1464_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16057..16536
DNA (480bp) protein (160aa)
alkyl hydroperoxide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A1C65
alkyl hydroperoxide reductase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1464_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16533..17015
DNA (483bp) protein (161aa)
peptidylprolyl isomerase n=1 Tax=Thiobacillus thioparus RepID=UPI00037B3FE9
FKBP-type peptidylprolyl isomerase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1464_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17108..17917
DNA (810bp) protein (270aa)
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
acetyl-CoA carboxylase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI0003611905
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1464_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17925..19274
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037898AB
cell cycle protein MesJ
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1464_22
unknown

Not on your lists

19485..19916
DNA (432bp) protein (144aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_1464_23
unknown

Not on your lists

19924..20073
DNA (150bp) protein (50aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_1464_24
unknown

Not on your lists

comp(20127..20267)
DNA (141bp) protein (47aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_1464_25
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20329..21444
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EC436
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
RTP_03222018_0_2um_scaffold_1464_26
Leptospirillum ferrodiazotrophum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

21908..24511
DNA (2604bp) protein (868aa)
diguanylate cyclase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003645F40
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:EES53865.1}; TaxID=412449 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferrodiazotrophum.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
RTP_03222018_0_2um_scaffold_1464_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24860..25288
DNA (429bp) protein (143aa)
nucleoside diphosphate kinase (EC:2.7.4.6)
nucleoside diphosphate kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00037B9AD2
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1464_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25376..26182
DNA (807bp) protein (269aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000255|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RLMN_THIDA
hypothetical protein
RTP_03222018_0_2um_scaffold_1464_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26179..26955
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A7605
TPR repeat-containing pilus assembly protein PilF
Putative pilus assembly protein PilF, TPR repeat {ECO:0000313|EMBL:AAZ96545.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_1464_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26952..27761
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E52B8
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 49 in total

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