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RTP_03222018_0_2um_scaffold_1885

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_1885_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163..1227)
DNA (1065bp) protein (355aa)
modC1; putative molybdenum transport system ATP-binding protein (EC:3.6.3.29)
molybdenum ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036AD784
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1885_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1224..1907)
DNA (684bp) protein (228aa)
molybdenum ABC transporter permease n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CBA92
molybdenum ABC transporter permease
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1885_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2131..2889)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000379A92A
molybdenum ABC transporter periplasmic binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1885_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2886..3821)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363B837
LysR family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_1885_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3903..6173
DNA (2271bp) protein (757aa)
5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (EC:2.1.1.14)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036FFA4F
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1885_6
Bacillus sp. EGD-AK10, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6386..7723)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Burkholderia bryophila RepID=UPI00036A2D2A
Uncharacterized protein {ECO:0000313|EMBL:ERI44210.1}; TaxID=1386080 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. EGD-AK10.;"
putative DNA restriction-modification system, DNA methylase
RTP_03222018_0_2um_scaffold_1885_7
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7802..8710
DNA (909bp) protein (303aa)
Site-specific DNA-methyltransferase (adenine-specific) {ECO:0000256|RuleBase:RU361257}; EC=2.1.1.72 {ECO:0000256|RuleBase:RU361257};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein n=1 Tax=Pseudomonas RepID=UPI000368B645
DNA adenine methylase
RTP_03222018_0_2um_scaffold_1885_8
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8711..10075
DNA (1365bp) protein (455aa)
hypothetical protein n=1 Tax=Burkholderia bryophila RepID=UPI000374D34E
Uncharacterized protein {ECO:0000313|EMBL:EGH27736.1}; TaxID=629262 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" source="Pseudomonas syringae pv. japonica str. M301072.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_1885_9
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10345..11550)
DNA (1206bp) protein (402aa)
Putative transcription regulator containing HTH domain n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QNN1_AZOSU
putative transcription regulator containing HTH domain
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
RTP_03222018_0_2um_scaffold_1885_10
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11595..11879)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii OR214 RepID=R0DY01_RALPI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENZ78303.1}; TaxID=1264675 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii OR214.;"
RTP_03222018_0_2um_scaffold_1885_11
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12606..13376)
DNA (771bp) protein (257aa)
Thiol:disulfide interchange protein DsbG n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF75_THIDA
dsbG; disulfide isomerase/thiol-disulfide oxidase
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
RTP_03222018_0_2um_scaffold_1885_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13455..13874)
DNA (420bp) protein (140aa)
Putative thiol:disulfide interchange protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF74_THIDA
thiol:disulfide interchange protein
Putative thiol:disulfide interchange protein {ECO:0000313|EMBL:AAZ98741.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_1885_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13928..14563)
DNA (636bp) protein (212aa)
Probable thiol:disulfide interchange protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF73_THIDA
thiol:disulfide interchange protein
Probable thiol:disulfide interchange protein {ECO:0000313|EMBL:AAZ98742.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_1885_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15025..15429)
DNA (405bp) protein (135aa)
Membrane protein, putative id=1322707 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1885_15
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15447..15875)
DNA (429bp) protein (143aa)
Uncharacterized protein id=12493605 bin=THIO_HI species=Nitrococcus mobilis genus=Nitrococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:KJR99702.1}; TaxID=1629713 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium BRH_c16a.;"
RTP_03222018_0_2um_scaffold_1885_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16052..16525
DNA (474bp) protein (158aa)
rubrerythrin/nigerythrin-like protein id=12493606 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rubrerythrin/nigerythrin-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1885_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16564..16737
DNA (174bp) protein (58aa)
rubredoxin n=1 Tax=Thiobacillus thioparus RepID=UPI00036260B0
rubredoxin
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1885_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16796..17992
DNA (1197bp) protein (399aa)
Putative rubredoxin reductase id=1322704 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rubredoxin reductase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1885_19
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18000..18407)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C731E
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABE46677.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
RTP_03222018_0_2um_scaffold_1885_20
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18475..18813
DNA (339bp) protein (113aa)
Mercuric transport protein MerT n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5CAF1_9GAMM
mercuric ion transport protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_1885_21
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18823..19110
DNA (288bp) protein (96aa)
Mercury transporter n=2 Tax=Pseudomonas aeruginosa RepID=U5AN52_PSEAI
mercuric transporter periplasmic component
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
RTP_03222018_0_2um_scaffold_1885_22
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

19107..19343
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P9E6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK39855.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
RTP_03222018_0_2um_scaffold_1885_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19544..19990)
DNA (447bp) protein (149aa)
Putative uncharacterized protein id=1322702 bin=GWE1_T_denit_62_9 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rhodanese-related sulfurtransferase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1885_24
unknown

Not on your lists

comp(20169..20390)
DNA (222bp) protein (74aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_1885_25
unknown

Not on your lists

20888..21040
DNA (153bp) protein (51aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_1885_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21494..22156
DNA (663bp) protein (221aa)
Transcription regulatory protein, ArsR family id=1347980 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ArsR family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1885_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22194..22943
DNA (750bp) protein (250aa)
putative metallo-beta-lactamase family protein id=12498211 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
metallo-beta-lactamase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1885_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22940..24247
DNA (1308bp) protein (436aa)
Putative uncharacterized protein id=1345661 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1885_29
unknown

Not on your lists

24259..24702
DNA (444bp) protein (148aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_1885_30
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24714..25034
DNA (321bp) protein (107aa)
DsrE family protein id=4918043 bin=GWA2_Elusimicrobia_66_18 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
DsrE family protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
Displaying items 1-30 of 51 in total

View Taxonomy