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RTP_03222018_0_2um_scaffold_1467

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_1467_1

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3..1073
DNA (1071bp) protein (357aa)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:CBI10502.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBI10502.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ATP-dependent DNA helicase RecQ n=1 Tax=mine drainage metagenome RepID=E6QTD0_9ZZZZ
ATP-dependent DNA helicase RecQ
RTP_03222018_0_2um_scaffold_1467_2

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1101..1559
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTC9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10501.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_1467_3
RLO_PLX_64_10, Bacteria

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1561..1806
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UGK7_9FLAO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
RTP_03222018_0_2um_scaffold_1467_4
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1799..3826
DNA (2028bp) protein (676aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030A4BC1
Thymidine phosphorylase {ECO:0000313|EMBL:EGF30332.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_1467_5
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3907..4425
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030A4BC1
Thymidine phosphorylase {ECO:0000313|EMBL:EGF30332.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
RTP_03222018_0_2um_scaffold_1467_6
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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4426..5073
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B6P5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO37013.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_1467_7

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5082..6320
DNA (1239bp) protein (413aa)
Malate dehydrogenase (Oxaloacetate decarboxylating) (NADP+) {ECO:0000313|EMBL:CBI10579.1}; EC=1.1.1.40 {ECO:0000313|EMBL:CBI10579.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) (EC:1.1.1.40)
Malate dehydrogenase (Oxaloacetate decarboxylating) (NADP+) n=1 Tax=mine drainage metagenome RepID=E6QTK7_9ZZZZ
RTP_03222018_0_2um_scaffold_1467_8
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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6329..9001
DNA (2673bp) protein (891aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AM22_9PROT
glutamate-ammonia-ligase adenylyltransferase
RTP_03222018_0_2um_scaffold_1467_9
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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9049..9969
DNA (921bp) protein (307aa)
Branched-chain amino acid aminotransferase n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DL48_METS0
branched-chain amino acid aminotransferase
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:ADI30519.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_03222018_0_2um_scaffold_1467_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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9979..10179
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00036690EC
Uncharacterized protein {ECO:0000313|EMBL:CCU62327.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_1467_11
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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10260..11132
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H3D9_METFK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE48998.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
RTP_03222018_0_2um_scaffold_1467_12
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

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11155..11592
DNA (438bp) protein (146aa)
hypothetical protein; K09004 hypothetical protein id=12495897 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=CG_Beta_01
RTP_03222018_0_2um_scaffold_1467_13

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comp(11606..12466)
DNA (861bp) protein (287aa)
Formyltetrahydrofolate hydrolase {ECO:0000313|EMBL:CBI11165.1}; EC=3.5.1.10 {ECO:0000313|EMBL:CBI11165.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
formyltetrahydrofolate deformylase (EC:3.5.1.10)
Formyltetrahydrofolate hydrolase n=1 Tax=mine drainage metagenome RepID=E6QV92_9ZZZZ
RTP_03222018_0_2um_scaffold_1467_14

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12735..15605
DNA (2871bp) protein (957aa)
Putative Ribonucleoside-diphosphate reductase (Ribonucleoside diphosphate reductase, alpha subunit) (Ribonucleotide reductase large subunit) {ECO:0000313|EMBL:CBI11166.1}; EC=1.17.4.1 {ECO:0000313|EMBL:CBI11166.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
Putative Ribonucleoside-diphosphate reductase (Ribonucleoside diphosphate reductase, alpha subunit) (Ribonucleotide reductase large subunit) n=1 Tax=mine drainage metagenome RepID=E6QV93_9ZZZZ
RTP_03222018_0_2um_scaffold_1467_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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15635..16759
DNA (1125bp) protein (375aa)
ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHF8_THIDA
RTP_03222018_0_2um_scaffold_1467_16
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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16862..17170
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A056_METMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG01195.1}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
RTP_03222018_0_2um_scaffold_1467_17
Vibrio sp. JCM 19053, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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17167..17721
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GJ71_NITSI
Uncharacterized protein {ECO:0000313|EMBL:GAK17376.1}; TaxID=1460648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sp. JCM 19053.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_1467_18
Desulfobulbus sp. Tol-SR, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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17723..17977
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A4H6_METMM
Uncharacterized protein {ECO:0000313|EMBL:KGO33597.1}; TaxID=1536652 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus sp. Tol-SR.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_1467_19
unknown

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18010..18381
DNA (372bp) protein (124aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_1467_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18792..20012)
DNA (1221bp) protein (407aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGU1_THIDA
TPR repeat-containing protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98152.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying 20 items

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