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RTP_03222018_0_2um_scaffold_8772

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_8772_1

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3..788
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QSG4_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10186.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_8772_2
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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918..1454
DNA (537bp) protein (179aa)
hslV; ATP-dependent protease peptidase subunit (EC:3.4.25.1)
ATP-dependent protease subunit HslV {ECO:0000255|HAMAP-Rule:MF_00248}; EC=3.4.25.2 {ECO:0000255|HAMAP-Rule:MF_00248};; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
ATP-dependent protease subunit HslV n=1 Tax=Azoarcus sp. (strain BH72) RepID=HSLV_AZOSB
RTP_03222018_0_2um_scaffold_8772_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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1459..2802
DNA (1344bp) protein (448aa)
ATP-dependent protease n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00037D95C8
hslU; ATP-dependent protease ATP-binding subunit HslU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
RTP_03222018_0_2um_scaffold_8772_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2964..3548
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHY2_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97751.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_8772_5
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3556..4206)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003161E3F
phosphoesterase PA-phosphatase-like protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_03222018_0_2um_scaffold_8772_6
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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4405..4623
DNA (219bp) protein (73aa)
Prevent-host-death family protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IRW9_9GAMM
Antitoxin {ECO:0000313|EMBL:GAO34803.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
prevent-host-death family protein
RTP_03222018_0_2um_scaffold_8772_7
Legionella pneumophila, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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4624..4809
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Legionella pneumophila (strain Lens) RepID=Q5WW71_LEGPL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAH15828.1}; TaxID=297245 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella pneumophila (strain Lens).;"
RTP_03222018_0_2um_scaffold_8772_8
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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5390..5656
DNA (267bp) protein (89aa)
Transcriptional regulator, AbrB family n=1 Tax=mine drainage metagenome RepID=T1CUY7_9ZZZZ
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
RTP_03222018_0_2um_scaffold_8772_9
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

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5644..6096
DNA (453bp) protein (151aa)
PilT protein domain protein n=1 Tax=Chlorobium limicola (strain DSM 245 / NBRC 103803) RepID=B3EH62_CHLL2
twitching mobility protein PilT
Tax=CG_Beta_01
RTP_03222018_0_2um_scaffold_8772_10
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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6199..6369
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82V05_NITEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD85218.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
RTP_03222018_0_2um_scaffold_8772_11

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comp(6391..7248)
DNA (858bp) protein (286aa)
dTDP-4-dehydrorhamnose reductase (DTDP-4-keto-L-rhamnose reductase) (DTDP-6-deoxy-L-mannose dehydrogenase) (DTDP-L-rhamnose synthetase) {ECO:0000313|EMBL:CBI11169.1}; EC=1.1.1.133 {ECO:0000313|EMBL:CBI11169.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase (DTDP-4-keto-L-rhamnose reductase) (DTDP-6-deoxy-L-mannose dehydrogenase) (DTDP-L-rhamnose synthetase) n=1 Tax=mine drainage metagenome RepID=E6QV96_9ZZZZ
RTP_03222018_0_2um_scaffold_8772_12

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comp(7245..7787)
DNA (543bp) protein (181aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (DTDP-4-keto-6-deoxyglucose 3,5-epimerase) (DTDP-L-rhamnose synthetase) {ECO:0000313|EMBL:CBI11170.1}; EC=5.1.3.13 {ECO:0000313|EMBL:CBI11170.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase (DTDP-4-keto-6-deoxyglucose 3,5-epimerase) (DTDP-L-rhamnose synthetase) n=1 Tax=mine drainage metagenome RepID=E6QV97_9ZZZZ
RTP_03222018_0_2um_scaffold_8772_13

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comp(7790..8260)
DNA (471bp) protein (157aa)
Glucose-1-phosphate thymidylyltransferase (DTDP-glucose synthase) (DTDP-glucose pyrophosphorylase) {ECO:0000313|EMBL:CBI11171.1}; EC=2.7.7.24 {ECO:0000313|EMBL:CBI11171.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase (DTDP-glucose synthase) (DTDP-glucose pyrophosphorylase) n=1 Tax=mine drainage metagenome RepID=E6QV98_9ZZZZ
Displaying 13 items

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