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RTP_03222018_0_2um_scaffold_3067

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_3067_1
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..796)
DNA (795bp) protein (265aa)
Type IV pilus secretin PilQ n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6APC6_9PROT
Secretin {ECO:0000313|EMBL:GAO34845.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
type IV pilus secretin PilQ
RTP_03222018_0_2um_scaffold_3067_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(810..1313)
DNA (504bp) protein (168aa)
type IV pilus assembly protein PilP; K02665 type IV pilus assembly protein PilP id=12493057 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
type IV pilus assembly protein PilP
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_3067_3
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1310..1933)
DNA (624bp) protein (208aa)
type IV pilus assembly membrane transmembrane protein; K02664 type IV pilus assembly protein PilO id=12493056 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Pilus assembly protein PilO
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_3067_4
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1930..2511)
DNA (582bp) protein (194aa)
type IV pilus assembly protein PilN; K02663 type IV pilus assembly protein PilN id=12495844 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Fimbrial protein {ECO:0000313|EMBL:GAO34842.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
type IV pilus assembly protein PilN
RTP_03222018_0_2um_scaffold_3067_5
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2508..3584)
DNA (1077bp) protein (359aa)
Type IV pilus assembly protein PilM n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABH1_9PROT
Pilus assembly protein PilM {ECO:0000313|EMBL:GAO34841.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
type IV pilus assembly protein PilM
RTP_03222018_0_2um_scaffold_3067_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3781..6114
DNA (2334bp) protein (778aa)
penicillin-binding protein 1A n=1 Tax=Thiobacillus denitrificans RepID=UPI0003772513
penicillin-binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_3067_7
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6118..6726
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ADU9_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN36738.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_03222018_0_2um_scaffold_3067_8
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6690..7688)
DNA (999bp) protein (333aa)
hemB; porphobilinogen synthase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AK55_9PROT
Tax=CG_Beta_01
RTP_03222018_0_2um_scaffold_3067_9
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7830..8453)
DNA (624bp) protein (208aa)
Probable GTP-binding protein EngB n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTH4_SIDLE
ribosome biogenesis GTP-binding protein YsxC
Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
RTP_03222018_0_2um_scaffold_3067_10
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8559..9188
DNA (630bp) protein (210aa)
Cytochrome c class I n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QQ93_METS6
Cytochrome C {ECO:0000313|EMBL:GAO34835.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
class I cytochrome c
RTP_03222018_0_2um_scaffold_3067_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9339..10292
DNA (954bp) protein (318aa)
cytochrome c-type biogenesis protein; K07399 cytochrome c biogenesis protein id=12493040 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cytochrome c-type biogenesis protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 11 items

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