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RTP_03222018_0_2um_scaffold_561

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_561_1
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1087)
DNA (1086bp) protein (362aa)
ATP-dependent RNA helicase DbpA n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0A8S6_COLFT
dbpA; ATP-dependent 23S rRNA helicase DbpA
ATP-dependent 23S rRNA helicase DbpA {ECO:0000313|EMBL:AIY41825.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
RTP_03222018_0_2um_scaffold_561_2
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1250..1588
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DPA9_METS0
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_561_3
Burkholderia pyrrocinia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1649..1975
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL51929.1}; TaxID=60550 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia pyrrocinia (Pseudomonas pyrrocinia).;"
RTP_03222018_0_2um_scaffold_561_4
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1977..2771)
DNA (795bp) protein (265aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U2ZJ90_PSEAC
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAD61565.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
nitrate ABC transporter ATPases C and D
RTP_03222018_0_2um_scaffold_561_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2782..3669)
DNA (888bp) protein (296aa)
Nitrate transport permease n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGM1_THIDA
nitrate transport permease
Nitrate transport permease {ECO:0000313|EMBL:AAZ98226.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_561_6
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3726..5021)
DNA (1296bp) protein (432aa)
Nitrate transporter periplasmic component n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AD13_9PROT
nitrate transporter periplasmic component
Nitrate transporter periplasmic component {ECO:0000313|EMBL:BAN36068.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_03222018_0_2um_scaffold_561_7
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5266..6957)
DNA (1692bp) protein (564aa)
Protein serine/threonine phosphatase n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QI03_METS6
protein serine/threonine phosphatase
Protein serine/threonine phosphatase {ECO:0000313|EMBL:ACT49595.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
RTP_03222018_0_2um_scaffold_561_8
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6959..8170)
DNA (1212bp) protein (404aa)
Nitrate/nitrite transporter n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W0N3_9BURK
Nitrate/nitrite transporter {ECO:0000313|EMBL:EGF31585.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
nitrate transporter
RTP_03222018_0_2um_scaffold_561_9

Not on your lists

comp(8385..11411)
DNA (3027bp) protein (1009aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6QTE2_9ZZZZ
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) (Modular protein) {ECO:0000313|EMBL:CBI10514.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_561_10
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12014..12589)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00035DDAFD
response regulator receiver:ANTAR
Tax=RBG_16_Betaproteobacteria_66_20_curated
RTP_03222018_0_2um_scaffold_561_11
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12599..12961)
DNA (363bp) protein (121aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T0V1_JANMA
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:ABR90431.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
RTP_03222018_0_2um_scaffold_561_12
Shewanella baltica, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12958..13902)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003649E3C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK48246.1}; TaxID=407976 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella baltica (strain OS223).;"
RTP_03222018_0_2um_scaffold_561_13
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13913..14242)
DNA (330bp) protein (110aa)
NAD(P)H-dependent nitrite reductase, small subunit n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QGR6_AZOSU
NAD(P)H-dependent nitrite reductase, small subunit
NAD(P)H-dependent nitrite reductase, small subunit {ECO:0000313|EMBL:AEV26202.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
RTP_03222018_0_2um_scaffold_561_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14261..16690)
DNA (2430bp) protein (810aa)
assimilatory nitrite reductase (NAD(P)H) large subunit (EC:1.7.1.4)
Nitrite and sulfite reductase iron-sulfur/siroheme-binding site id=1362112 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_561_15
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16825..17577)
DNA (753bp) protein (251aa)
uroporphyrin-III C-methyltransferase n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI000381FD35
Uroporphyrinogen-III C-methyltransferase {ECO:0000313|EMBL:EGK71299.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
uroporphyrin-III C-methyltransferase
RTP_03222018_0_2um_scaffold_561_16
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17588..18571)
DNA (984bp) protein (328aa)
glycosyl transferase n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI0003753B7E
glycosyl transferase
Tax=BJP_IG2103_Dechloromonas_60_92
RTP_03222018_0_2um_scaffold_561_17
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18568..21297)
DNA (2730bp) protein (910aa)
nitrate reductase subunit alpha n=1 Tax=Methylophilus methylotrophus RepID=UPI00035F4725
molybdopterin oxidoreductase
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
RTP_03222018_0_2um_scaffold_561_18
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21431..21685)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI00036A99C5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADC72476.1}; TaxID=396595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
RTP_03222018_0_2um_scaffold_561_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21920..22528)
DNA (609bp) protein (203aa)
putative outer membrane lipoprotein id=12493296 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
17 kDa surface antigen
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_561_20
unknown

Not on your lists

comp(22571..22834)
DNA (264bp) protein (88aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_561_21
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22940..23419)
DNA (480bp) protein (160aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABE8_9PROT
moaC; molybdenum cofactor biosynthesis protein C
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_03222018_0_2um_scaffold_561_22
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23459..24892
DNA (1434bp) protein (478aa)
Peptidase M48, Ste24p n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B1T9_9PROT
Peptidase M48 {ECO:0000313|EMBL:GAO35048.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
peptidase M48, Ste24p
RTP_03222018_0_2um_scaffold_561_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25112..25483
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037E5A75
monoheme cytochrome SoxX
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_561_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25505..25966
DNA (462bp) protein (154aa)
transmembrane protein id=12497727 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_561_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26012..26326
DNA (315bp) protein (105aa)
sulfur oxidation protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036F3BCA
sulfur compound chelating protein SoxZ
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_561_26
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26401..27231
DNA (831bp) protein (277aa)
diheme cytochrome SoxA id=12497729 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
diheme cytochrome SoxA
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_561_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27412..29127
DNA (1716bp) protein (572aa)
Probable sulfur oxidation signal protein, twin-arginine translocation pathway id=1345670 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
sulfate thiol esterase SoxB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 27 items

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