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RTP_03222018_0_2um_scaffold_951

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_951_1
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..76)
DNA (75bp) protein (25aa)
Probable transcriptional regulatory protein yebC n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9Q3_9PROT
yebC; hypothetical protein
Probable transcriptional regulatory protein SCT_1200 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
RTP_03222018_0_2um_scaffold_951_2
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(317..997)
DNA (681bp) protein (227aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; Flags: Precursor;; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
7-cyano-7-deazaguanine synthase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SCJ6_GALCS
exsB protein
RTP_03222018_0_2um_scaffold_951_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(998..1642)
DNA (645bp) protein (215aa)
7-carboxy-7-deazaguanine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFF4_9PROT
radical activating enzyme
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_03222018_0_2um_scaffold_951_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1642..2424)
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGT6_THIDA
TPR repeat-containing protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98157.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_951_5

Not on your lists

comp(2428..3024)
DNA (597bp) protein (199aa)
Peptidoglycan-associated lipoprotein (19 kDa surface antigen) (PPL) n=1 Tax=mine drainage metagenome RepID=E6QQW3_9ZZZZ
Peptidoglycan-associated lipoprotein (19 kDa surface antigen) (PPL) {ECO:0000313|EMBL:CBI09634.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peptidoglycan-associated lipoprotein
RTP_03222018_0_2um_scaffold_951_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3069..4337)
DNA (1269bp) protein (423aa)
Protein TolB n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABB2_9PROT
tolB; translocation protein TolB
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_03222018_0_2um_scaffold_951_7

Not on your lists

comp(4337..5191)
DNA (855bp) protein (285aa)
Putative Periplasmic protein TonB n=1 Tax=mine drainage metagenome RepID=E6QQW6_9ZZZZ
Putative Periplasmic protein TonB {ECO:0000313|EMBL:CBI09637.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
protein TolA
RTP_03222018_0_2um_scaffold_951_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5191..5613)
DNA (423bp) protein (141aa)
Tol biopolymer transport system, TolR protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFF6_9PROT
Tol biopolymer transport system, TolR protein {ECO:0000313|EMBL:CCU61881.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
biopolymer transport protein ExbD/TolR
RTP_03222018_0_2um_scaffold_951_9
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5610..6263)
DNA (654bp) protein (218aa)
MotA/TolQ/ExbB proton channel family protein; K03562 biopolymer transport protein TolQ id=12496613 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
protein TolQ
Tax=GWA2_Gallionellales_60_18_curated
RTP_03222018_0_2um_scaffold_951_10
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6298..6699)
DNA (402bp) protein (134aa)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XEQ2_METNJ
4-hydroxybenzoyl-CoA thioesterase
Methylophaga nitratireducenticrescens strain JAM1, complete genome {ECO:0000313|EMBL:AFI82871.1}; TaxID=754476 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM; 25689 / JAM1).;"
RTP_03222018_0_2um_scaffold_951_11

Not on your lists

comp(6692..7720)
DNA (1029bp) protein (343aa)
Holliday junction DNA helicase ruvB n=1 Tax=mine drainage metagenome RepID=E6QQX1_9ZZZZ
Holliday junction DNA helicase ruvB {ECO:0000313|EMBL:CBI09642.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Holliday junction DNA helicase RuvB
RTP_03222018_0_2um_scaffold_951_12
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7717..8295)
DNA (579bp) protein (193aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
Holliday junction DNA helicase RuvA n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI000370EB59
ruvA; holliday junction DNA helicase ruva
RTP_03222018_0_2um_scaffold_951_13
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8303..8830)
DNA (528bp) protein (176aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC id=2139060 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_03222018_0_2um_scaffold_951_14

Not on your lists

8903..9865
DNA (963bp) protein (321aa)
Putative alpha/beta hydrolase, YheT type n=1 Tax=mine drainage metagenome RepID=E6QQX4_9ZZZZ
Putative alpha/beta hydrolase, YheT type {ECO:0000313|EMBL:CBI09645.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
alpha/beta hydrolase
RTP_03222018_0_2um_scaffold_951_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9905..11281
DNA (1377bp) protein (459aa)
phosphomannomutase (EC:5.4.2.8)
phosphoglucomutase n=1 Tax=Thiobacillus thioparus RepID=UPI000366740E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_951_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11306..11857
DNA (552bp) protein (184aa)
molybdenum cofactor biosynthesis protein MogA n=1 Tax=Thiobacillus thioparus RepID=UPI000363460F
mogA; molybdenum cofactor biosynthesis protein MogA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_951_17

Not on your lists

11946..12956
DNA (1011bp) protein (337aa)
Putative outer membrane protein OmpA (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6QPU7_9ZZZZ
Putative outer membrane protein OmpA (Modular protein) {ECO:0000313|EMBL:CBI09268.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_951_18

Not on your lists

comp(13050..16781)
DNA (3732bp) protein (1244aa)
ATP-dependent RNA helicase hrpA {ECO:0000313|EMBL:CBI09269.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBI09269.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ATP-dependent RNA helicase hrpA n=1 Tax=mine drainage metagenome RepID=E6QPU8_9ZZZZ
ATP-dependent helicase HrpA
RTP_03222018_0_2um_scaffold_951_19

Not on your lists

comp(16778..17437)
DNA (660bp) protein (220aa)
Putative integral membrane protein n=1 Tax=mine drainage metagenome RepID=E6QPU9_9ZZZZ
Putative integral membrane protein {ECO:0000313|EMBL:CBI09270.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative integral membrane protein
RTP_03222018_0_2um_scaffold_951_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17441..18190)
DNA (750bp) protein (250aa)
permease n=1 Tax=Thiobacillus denitrificans RepID=UPI000376458D
hypothetical protein
Uncharacterized conserved membrane protein {ECO:0000313|EMBL:AAZ96991.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_951_21

Not on your lists

comp(18190..18501)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QPV0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09271.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_951_22

Not on your lists

comp(18504..18887)
DNA (384bp) protein (128aa)
Protein crcB homolog n=1 Tax=mine drainage metagenome RepID=E6QPV1_9ZZZZ
Protein crcB homolog {ECO:0000313|EMBL:CBI09272.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
CrcB protein
RTP_03222018_0_2um_scaffold_951_23

Not on your lists

comp(19052..20029)
DNA (978bp) protein (326aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QPV3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09274.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_03222018_0_2um_scaffold_951_24

Not on your lists

comp(20068..20643)
DNA (576bp) protein (192aa)
Putative Prokaryotic chromosome segregation and condensation protein ScpB n=1 Tax=mine drainage metagenome RepID=E6QPV4_9ZZZZ
Putative Prokaryotic chromosome segregation and condensation protein ScpB {ECO:0000313|EMBL:CBI09275.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
condensin subunit ScpB
RTP_03222018_0_2um_scaffold_951_25
Burkholderia sp. KJ006, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20640..21098)
DNA (459bp) protein (153aa)
segregation and condensation protein A n=1 Tax=Burkholderia kururiensis RepID=UPI0003483193
segregation and condensation protein A
Segregation and condensation protein A {ECO:0000256|SAAS:SAAS00093938}; TaxID=416344 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. KJ006.;"
Displaying 25 items

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