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RTP_07252018_0_1um_scaffold_12661

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_07252018_0_1um_scaffold_12661_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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3..1004
DNA (1002bp) protein (334aa)
2-oxoacid:acceptor oxidoreductase, alpha subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIL5_NIAKG
2-oxoacid:acceptor oxidoreductase subunit alpha
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_07252018_0_1um_scaffold_12661_2

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1219..1545
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037F061C
Uncharacterized protein {ECO:0000313|EMBL:KHD90083.1}; TaxID=1511133 species="Bacteria; candidate division TM6.;" source="candidate division TM6 bacterium Zodletone_IIa.;"
hypothetical protein
RTP_07252018_0_1um_scaffold_12661_3
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1719..1961)
DNA (243bp) protein (81aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
Endonuclease III n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J5Z2_CYCMS
endonuclease III
RTP_07252018_0_1um_scaffold_12661_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(1991..2395)
DNA (405bp) protein (135aa)
Endonuclease III n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIM2_NIAKG
endonuclease III
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_07252018_0_1um_scaffold_12661_5
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(2484..3068)
DNA (585bp) protein (195aa)
endo-1,4-beta-xylanase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6238A
esterase
Esterase {ECO:0000313|EMBL:AFK02379.1}; Flags: Precursor;; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
RTP_07252018_0_1um_scaffold_12661_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(3599..3817)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIM3_NIAKG
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_07252018_0_1um_scaffold_12661_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(3922..4224)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003638E07
septum formation initiator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_07252018_0_1um_scaffold_12661_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(4462..5754)
DNA (1293bp) protein (431aa)
eno; enolase (EC:4.2.1.11)
enolase n=1 Tax=Niabella aurantiaca RepID=UPI00035E227B
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_07252018_0_1um_scaffold_12661_9
RIFOXYB2_FULL_Elusimicrobia_62_6_curated, Elusimicrobia, Bacteria

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comp(5808..6311)
DNA (504bp) protein (168aa)
GCN5-related N-acetyltransferase id=2621730 bin=GWA2_Elusimicrobia_56_46 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
putative acetyltransferase
Tax=RIFOXYB2_FULL_Elusimicrobia_62_6_curated
RTP_07252018_0_1um_scaffold_12661_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6315..6746)
DNA (432bp) protein (144aa)
Protein involved in gliding motility GldA {ECO:0000313|EMBL:AEW02880.1}; EC=3.6.3.25 {ECO:0000313|EMBL:AEW02880.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000374B0BA
gliding motility protein GldA
Displaying 10 items

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