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RTP_07252018_0_1um_Bacteroidetes_45_6

In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Displaying items 401-450 of 632 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_14639
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3236 bp 45.02 5.70 86.77
RTP_07252018_0_1um_scaffold_17813
Order: Sphingobacteriales (66.67%)
3 2840 bp 44.33 5.70 97.50
RTP_07252018_0_1um_scaffold_10052
Phylum: Bacteroidetes (100%)
3 4129 bp 47.08 5.70 82.68
RTP_07252018_0_1um_scaffold_21467
Species: Algoriphagus machipongonensis (50%)
2 2505 bp 46.35 5.69 90.30
RTP_07252018_0_1um_scaffold_12245
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 5934 bp 45.70 5.69 88.02
RTP_07252018_0_1um_scaffold_36550
Species: Niabella soli (100%)
1 1741 bp 45.43 5.69 81.33
RTP_07252018_0_1um_scaffold_16587
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 4836 bp 44.60 5.68 84.31
RTP_07252018_0_1um_scaffold_31000
Phylum: Bacteroidetes (100%)
3 1954 bp 43.76 5.68 89.82
RTP_07252018_0_1um_scaffold_5026
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 9239 bp 44.87 5.68 90.66
RTP_07252018_0_1um_scaffold_15318
Order: Sphingobacteriales (50%)
4 3142 bp 41.09 5.68 88.32
RTP_07252018_0_1um_scaffold_33421
Species: Flavihumibacter petaseus (50%)
2 1852 bp 45.52 5.67 89.25
RTP_07252018_0_1um_scaffold_5731
Phylum: Bacteroidetes (60%)
5 6057 bp 41.92 5.67 93.26
RTP_07252018_0_1um_scaffold_9598
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 4257 bp 45.24 5.67 95.63
RTP_07252018_0_1um_scaffold_19744
Species: Niabella soli (100%)
2 2647 bp 44.88 5.67 95.88
RTP_07252018_0_1um_scaffold_10367
Phylum: Bacteroidetes (100%)
5 4046 bp 46.02 5.67 94.91
RTP_07252018_0_1um_scaffold_19936
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 3448 bp 45.27 5.66 94.49
RTP_07252018_0_1um_scaffold_9371
Order: Sphingobacteriales (50%)
6 4323 bp 44.51 5.66 95.07
RTP_07252018_0_1um_scaffold_17847
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2837 bp 45.47 5.66 91.89
RTP_07252018_0_1um_scaffold_39564
Order: Cytophagales (66.67%)
3 1646 bp 42.89 5.65 93.68
RTP_07252018_0_1um_scaffold_32023
Order: Cytophagales (50%)
4 1910 bp 44.87 5.65 81.36
RTP_07252018_0_1um_scaffold_15196
Phylum: Bacteroidetes (60%)
5 3158 bp 45.19 5.65 77.90
RTP_07252018_0_1um_scaffold_15939
Species: Arcticibacter svalbardensis (50%)
4 3058 bp 45.91 5.64 100.95
RTP_07252018_0_1um_scaffold_31740
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1921 bp 46.17 5.62 89.33
RTP_07252018_0_1um_scaffold_11314
Phylum: Bacteroidetes (66.67%)
3 3817 bp 43.65 5.62 90.62
RTP_07252018_0_1um_scaffold_32333
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1896 bp 44.94 5.62 83.39
RTP_07252018_0_1um_scaffold_66812
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 2188 bp 45.20 5.62 89.67
RTP_07252018_0_1um_scaffold_39231
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1656 bp 43.96 5.62 99.09
RTP_07252018_0_1um_scaffold_13931
Order: Sphingobacteriales (75%)
4 3345 bp 46.34 5.61 90.04
RTP_07252018_0_1um_scaffold_33467
Order: Sphingobacteriales (50%)
4 2512 bp 45.70 5.61 89.69
RTP_07252018_0_1um_scaffold_19183
Phylum: Bacteroidetes (80%)
5 2699 bp 44.76 5.61 88.81
RTP_07252018_0_1um_scaffold_16709
Order: Sphingobacteriales (50%)
4 3743 bp 46.46 5.61 67.09
RTP_07252018_0_1um_scaffold_21042
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2538 bp 43.85 5.61 96.81
RTP_07252018_0_1um_scaffold_75137
Species: Dyadobacter fermentans (50%)
2 1822 bp 43.47 5.60 86.61
RTP_07252018_0_1um_scaffold_11513
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 3777 bp 44.64 5.60 91.10
RTP_07252018_0_1um_scaffold_23589
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2356 bp 46.77 5.60 88.24
RTP_07252018_0_1um_scaffold_4424
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (62.5%)
8 7213 bp 44.97 5.59 89.84
RTP_07252018_0_1um_scaffold_35654
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1771 bp 47.04 5.59 92.32
RTP_07252018_0_1um_scaffold_7593
Genus: Flavihumibacter (50%)
4 4993 bp 44.42 5.59 91.75
RTP_07252018_0_1um_scaffold_7970
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (81.82%)
11 6964 bp 44.90 5.58 93.27
RTP_07252018_0_1um_scaffold_8191
Order: Sphingobacteriales (50%)
6 5269 bp 46.57 5.58 94.97
RTP_07252018_0_1um_scaffold_13015
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 3493 bp 43.37 5.58 94.73
RTP_07252018_0_1um_scaffold_29509
Order: Cytophagales (66.67%)
3 2021 bp 44.09 5.57 90.55
RTP_07252018_0_1um_scaffold_16900
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2943 bp 41.86 5.56 83.89
RTP_07252018_0_1um_scaffold_19495
Order: Sphingobacteriales (66.67%)
3 2671 bp 45.71 5.56 92.21
RTP_07252018_0_1um_scaffold_44964
Phylum: Bacteroidetes (75%)
4 2729 bp 45.40 5.55 89.37
RTP_07252018_0_1um_scaffold_10973
Species: Solitalea canadensis (60%)
5 3897 bp 41.78 5.54 75.60
RTP_07252018_0_1um_scaffold_25316
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2246 bp 44.97 5.54 84.55
RTP_07252018_0_1um_scaffold_6840
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 5360 bp 44.96 5.54 96.04
RTP_07252018_0_1um_scaffold_8836
Order: Sphingobacteriales (50%)
4 4961 bp 44.57 5.53 79.28
RTP_07252018_0_1um_scaffold_10921
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 3906 bp 42.70 5.53 98.85
Displaying items 401-450 of 632 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.