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RTP_07252018_0_1um_Bacteroidetes_45_6

In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Displaying items 451-500 of 632 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_33679
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1843 bp 43.57 5.53 76.02
RTP_07252018_0_1um_scaffold_6916
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (83.33%)
6 6245 bp 46.81 5.52 90.31
RTP_07252018_0_1um_scaffold_30399
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1982 bp 41.12 5.52 66.45
RTP_07252018_0_1um_scaffold_6565
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (88.89%)
9 6825 bp 45.32 5.52 82.90
RTP_07252018_0_1um_scaffold_17910
Order: Sphingobacteriales (50%)
4 2832 bp 45.41 5.51 91.10
RTP_07252018_0_1um_scaffold_17686
Species: Pedobacter sp. V48 (50%)
4 2856 bp 47.72 5.51 99.68
RTP_07252018_0_1um_scaffold_16937
Species: Niastella koreensis (50%)
2 2939 bp 44.13 5.51 59.20
RTP_07252018_0_1um_scaffold_15159
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3163 bp 47.68 5.50 84.32
RTP_07252018_0_1um_scaffold_25518
Species: Flavobacterium johnsoniae (50%)
2 2235 bp 44.79 5.50 75.97
RTP_07252018_0_1um_scaffold_5059
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
12 7633 bp 46.39 5.50 92.09
RTP_07252018_0_1um_scaffold_33321
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 1856 bp 45.15 5.50 68.86
RTP_07252018_0_1um_scaffold_11982
Phylum: Bacteroidetes (80%)
5 3680 bp 43.72 5.50 85.11
RTP_07252018_0_1um_scaffold_5019
Species: Niastella koreensis (50%)
6 6607 bp 45.10 5.49 96.67
RTP_07252018_0_1um_scaffold_30713
Species: Niastella koreensis (50%)
2 1968 bp 45.12 5.49 77.90
RTP_07252018_0_1um_scaffold_2865
Phylum: Bacteroidetes (91.67%)
12 9916 bp 43.91 5.48 88.64
RTP_07252018_0_1um_scaffold_7562
Phylum: Bacteroidetes (66.67%)
6 5005 bp 43.84 5.48 96.62
RTP_07252018_0_1um_scaffold_19901
Phylum: Bacteroidetes (66.67%)
3 2634 bp 43.66 5.47 90.66
RTP_07252018_0_1um_scaffold_34184
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3206 bp 44.23 5.47 87.77
RTP_07252018_0_1um_scaffold_23838
Species: Flavobacterium sp. EM1308 (50%)
2 2337 bp 44.54 5.46 99.23
RTP_07252018_0_1um_scaffold_25712
Phylum: Bacteroidetes (100%)
5 4104 bp 45.42 5.45 94.37
RTP_07252018_0_1um_scaffold_28671
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2064 bp 46.12 5.45 86.05
RTP_07252018_0_1um_scaffold_26220
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 4354 bp 44.33 5.44 83.30
RTP_07252018_0_1um_scaffold_26025
Phylum: Bacteroidetes (66.67%)
3 2207 bp 44.09 5.44 92.57
RTP_07252018_0_1um_scaffold_4813
Phylum: Bacteroidetes (71.43%)
7 6796 bp 43.38 5.43 88.86
RTP_07252018_0_1um_scaffold_33452
Phylum: Bacteroidetes (66.67%)
3 1851 bp 43.44 5.43 82.50
RTP_07252018_0_1um_scaffold_21725
Species: Solitalea canadensis (50%)
2 2484 bp 45.13 5.43 90.46
RTP_07252018_0_1um_scaffold_29595
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2017 bp 45.66 5.43 91.77
RTP_07252018_0_1um_scaffold_12141
Phylum: Bacteroidetes (66.67%)
3 4458 bp 45.09 5.42 96.70
RTP_07252018_0_1um_scaffold_19331
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2684 bp 46.05 5.42 97.24
RTP_07252018_0_1um_scaffold_39108
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1661 bp 45.33 5.42 85.61
RTP_07252018_0_1um_scaffold_38071
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1692 bp 46.04 5.41 80.67
RTP_07252018_0_1um_scaffold_25777
Order: Cytophagales (66.67%)
3 2220 bp 46.67 5.41 89.86
RTP_07252018_0_1um_scaffold_6765
Phylum: Bacteroidetes (60%)
5 5403 bp 42.72 5.41 80.73
RTP_07252018_0_1um_scaffold_41070
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 2466 bp 42.62 5.41 98.91
RTP_07252018_0_1um_scaffold_26403
Order: Sphingobacteriales (75%)
4 3633 bp 44.98 5.41 77.29
RTP_07252018_0_1um_scaffold_7163
Order: Sphingobacteriales (75%)
4 5199 bp 44.55 5.40 94.69
RTP_07252018_0_1um_scaffold_14372
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 3275 bp 43.82 5.40 91.42
RTP_07252018_0_1um_scaffold_10337
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 4053 bp 45.35 5.40 93.19
RTP_07252018_0_1um_scaffold_28241
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2086 bp 44.30 5.39 93.34
RTP_07252018_0_1um_scaffold_18078
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 3643 bp 44.99 5.39 91.66
RTP_07252018_0_1um_scaffold_3679
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 8230 bp 45.75 5.38 88.76
RTP_07252018_0_1um_scaffold_6908
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
5 5329 bp 45.30 5.38 96.43
RTP_07252018_0_1um_scaffold_11067
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 3873 bp 46.35 5.38 76.84
RTP_07252018_0_1um_scaffold_7729
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 4936 bp 45.30 5.38 94.27
RTP_07252018_0_1um_scaffold_15474
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 3122 bp 37.67 5.38 99.36
RTP_07252018_0_1um_scaffold_14670
Order: Sphingobacteriales (57.14%)
7 5267 bp 44.98 5.38 95.75
RTP_07252018_0_1um_scaffold_11229
Phylum: Bacteroidetes (88.89%)
9 9211 bp 45.71 5.37 89.05
RTP_07252018_0_1um_scaffold_50011
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 2598 bp 44.61 5.37 89.61
RTP_07252018_0_1um_scaffold_9268
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 4359 bp 45.22 5.37 93.67
RTP_07252018_0_1um_scaffold_13358
Species: Niastella koreensis (50%)
4 3439 bp 44.98 5.36 87.93
Displaying items 451-500 of 632 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.