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RTP_07252018_0_1um_Bacteroidetes_45_6

In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Displaying items 501-550 of 632 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_10811
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (57.14%)
7 5121 bp 45.40 5.36 77.33
RTP_07252018_0_1um_scaffold_29599
Phylum: Bacteroidetes (100%)
3 2017 bp 46.01 5.35 91.47
RTP_07252018_0_1um_scaffold_38413
Phylum: Bacteroidetes (66.67%)
3 1682 bp 44.35 5.35 75.80
RTP_07252018_0_1um_scaffold_6154
Phylum: Bacteroidetes (85.71%)
7 8627 bp 43.32 5.34 93.06
RTP_07252018_0_1um_scaffold_8655
Phylum: Bacteroidetes (87.5%)
8 9222 bp 45.00 5.34 87.02
RTP_07252018_0_1um_scaffold_18266
Species: Niastella koreensis (66.67%)
3 3512 bp 44.05 5.34 96.61
RTP_07252018_0_1um_scaffold_71810
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1940 bp 44.48 5.34 61.39
RTP_07252018_0_1um_scaffold_21439
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3239 bp 44.27 5.33 97.53
RTP_07252018_0_1um_scaffold_13037
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3491 bp 44.63 5.33 81.98
RTP_07252018_0_1um_scaffold_29831
Species: GWA2_Bacteroidetes_40_15_curated (50%)
2 2007 bp 43.15 5.31 99.10
RTP_07252018_0_1um_scaffold_21680
Species: Niastella koreensis (50%)
2 2489 bp 45.24 5.30 99.68
RTP_07252018_0_1um_scaffold_15740
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 3085 bp 44.96 5.30 94.42
RTP_07252018_0_1um_scaffold_14282
Species: Niastella koreensis (50%)
2 3289 bp 40.56 5.29 95.50
RTP_07252018_0_1um_scaffold_6326
Order: Flavobacteriales (50%)
4 7707 bp 43.34 5.29 93.42
RTP_07252018_0_1um_scaffold_5680
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
5 6596 bp 45.45 5.28 89.42
RTP_07252018_0_1um_scaffold_21666
Species: Anditalea andensis (50%)
4 4337 bp 43.30 5.26 99.47
RTP_07252018_0_1um_scaffold_9804
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 4196 bp 45.19 5.26 87.15
RTP_07252018_0_1um_scaffold_16733
Phylum: Bacteroidetes (66.67%)
3 2963 bp 40.50 5.26 100.24
RTP_07252018_0_1um_scaffold_16880
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
6 2945 bp 45.09 5.25 95.45
RTP_07252018_0_1um_scaffold_9513
Species: Niastella koreensis (60%)
5 4283 bp 45.04 5.25 92.46
RTP_07252018_0_1um_scaffold_17825
Order: Sphingobacteriales (57.14%)
7 4997 bp 44.77 5.25 87.23
RTP_07252018_0_1um_scaffold_4240
Order: Sphingobacteriales (71.43%)
7 7463 bp 44.63 5.25 89.52
RTP_07252018_0_1um_scaffold_3142
Phylum: Bacteroidetes (81.82%)
11 11665 bp 40.45 5.25 84.82
RTP_07252018_0_1um_scaffold_10078
Phylum: Bacteroidetes (66.67%)
6 4965 bp 44.41 5.23 90.09
RTP_07252018_0_1um_scaffold_23221
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 2379 bp 44.81 5.23 88.15
RTP_07252018_0_1um_scaffold_29217
Order: Sphingobacteriales (75%)
4 2035 bp 43.83 5.23 88.16
RTP_07252018_0_1um_scaffold_25249
Genus: Pedobacter (80%)
5 3476 bp 46.38 5.22 91.66
RTP_07252018_0_1um_scaffold_9196
Species: Mucilaginibacter paludis (66.67%)
6 5012 bp 47.69 5.21 98.58
RTP_07252018_0_1um_scaffold_20766
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 2561 bp 44.83 5.21 96.52
RTP_07252018_0_1um_scaffold_54407
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 1959 bp 43.80 5.21 98.16
RTP_07252018_0_1um_scaffold_22986
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2395 bp 44.84 5.20 94.70
RTP_07252018_0_1um_scaffold_15622
Species: Niastella koreensis (50%)
4 4105 bp 45.99 5.19 95.30
RTP_07252018_0_1um_scaffold_11629
Species: Chitinophaga pinensis (50%)
4 3754 bp 46.30 5.19 96.06
RTP_07252018_0_1um_scaffold_5187
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (54.55%)
11 12297 bp 44.43 5.18 95.51
RTP_07252018_0_1um_scaffold_7318
Species: Niastella koreensis (50%)
4 5123 bp 45.73 5.18 97.85
RTP_07252018_0_1um_scaffold_30590
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1973 bp 44.91 5.17 95.03
RTP_07252018_0_1um_scaffold_18038
Phylum: Bacteroidetes (50%)
4 2818 bp 44.04 5.16 81.01
RTP_07252018_0_1um_scaffold_10709
Species: Haliscomenobacter hydrossis (50%)
4 3959 bp 43.22 5.15 91.92
RTP_07252018_0_1um_scaffold_17364
Species: Niastella koreensis (66.67%)
3 2889 bp 47.59 5.14 93.46
RTP_07252018_0_1um_scaffold_27894
Order: Cytophagales (50%)
4 2102 bp 44.29 5.14 94.77
RTP_07252018_0_1um_scaffold_28280
Phylum: Bacteroidetes (66.67%)
3 2084 bp 46.55 5.11 87.38
RTP_07252018_0_1um_scaffold_5689
Phylum: Bacteroidetes (85.71%)
7 6085 bp 46.15 5.10 94.22
RTP_07252018_0_1um_scaffold_8630
Phylum: Bacteroidetes (66.67%)
6 7005 bp 49.45 5.10 82.83
RTP_07252018_0_1um_scaffold_44974
Phylum: Bacteroidetes (66.67%)
3 1501 bp 48.10 5.10 88.14
RTP_07252018_0_1um_scaffold_16588
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 2980 bp 46.07 5.08 91.71
RTP_07252018_0_1um_scaffold_14944
Phylum: Bacteroidetes (100%)
5 4869 bp 42.97 5.08 93.96
RTP_07252018_0_1um_scaffold_21315
Species: Fibrisoma limi (66.67%)
3 2517 bp 45.17 5.07 90.58
RTP_07252018_0_1um_scaffold_9905
Order: Flavobacteriales (50%)
4 4170 bp 43.12 5.07 91.15
RTP_07252018_0_1um_scaffold_40040
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2163 bp 46.97 5.06 101.66
RTP_07252018_0_1um_scaffold_29614
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2016 bp 45.44 5.06 97.62
Displaying items 501-550 of 632 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.