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RTP_07252018_0_1um_scaffold_1057

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_07252018_0_1um_scaffold_1057_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76..2421
DNA (2346bp) protein (782aa)
Outer membrane protein assembly factor BamA id=1350779 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
surface antigen (D15)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1057_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2446..2946
DNA (501bp) protein (167aa)
OmpH/HlpA family outer membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003714ADE
outer membrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1057_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2956..3999
DNA (1044bp) protein (348aa)
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC:2.3.1.-)
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035EA099
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1057_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3996..4439
DNA (444bp) protein (148aa)
3-hydroxyacyl-ACP dehydratase (EC:4.2.1.-)
3-hydroxyacyl-ACP dehydratase n=1 Tax=Thiobacillus denitrificans RepID=UPI000369F25E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1057_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4441..5217
DNA (777bp) protein (259aa)
UDP-N-acetylglucosamine acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase id=1350783 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1057_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5336..6466
DNA (1131bp) protein (377aa)
lipid-A-disaccharide synthase (EC:2.4.1.182)
lipid-A-disaccharide synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036CD801
Tax=GWE1_Thiobacillus_62_9_curated
RTP_07252018_0_1um_scaffold_1057_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6463..7071
DNA (609bp) protein (203aa)
RNase HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] id=12493346 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RNase HII (EC:3.1.26.4)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_07252018_0_1um_scaffold_1057_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7083..7532
DNA (450bp) protein (150aa)
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C5C1C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_07252018_0_1um_scaffold_1057_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7717..8088)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381068F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96754.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_07252018_0_1um_scaffold_1057_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8111..9112
DNA (1002bp) protein (334aa)
sodium/hydrogen exchanger n=1 Tax=Thiobacillus thioparus RepID=UPI000380EA18
Ca2+/H+ antiporter
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_07252018_0_1um_scaffold_1057_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9169..10371)
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000364A37B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96757.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_07252018_0_1um_scaffold_1057_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10377..11537
DNA (1161bp) protein (387aa)
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
malate--CoA ligase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI000371A66E
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_07252018_0_1um_scaffold_1057_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11644..12519
DNA (876bp) protein (292aa)
succinyl-CoA synthetase (ADP-forming) subunit alpha (EC:6.2.1.5)
succinyl-CoA synthetase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI00036CB774
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1057_14
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12520..13128
DNA (609bp) protein (203aa)
FMN-binding negative transcriptional regulator n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ADD5_9PROT
FMN-binding negative transcriptional regulator
FMN-binding negative transcriptional regulator {ECO:0000313|EMBL:BAN36378.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_07252018_0_1um_scaffold_1057_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13132..14745
DNA (1614bp) protein (538aa)
NH(3)-dependent NAD(+) synthetase (EC:6.3.1.5)
NAD synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI0003707EDD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1057_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14742..15080
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1 id=12496955 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
glnK; nitrogen regulatory protein p-ii
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_07252018_0_1um_scaffold_1057_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15099..15926)
DNA (828bp) protein (276aa)
competence protein ComL n=1 Tax=Thiobacillus denitrificans RepID=UPI00036757FD
competence lipoprotein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1057_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15994..16905
DNA (912bp) protein (304aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
ribosomal large subunit pseudouridine synthase D n=1 Tax=Thiobacillus thioparus RepID=UPI000364D88F
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1057_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16920..17630
DNA (711bp) protein (237aa)
laccase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003753A13
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1057_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17634..18479)
DNA (846bp) protein (282aa)
DNA ligase (EC:6.5.1.1)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035D065C
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1057_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18467..18964)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C3BFF
acetyltransferase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_07252018_0_1um_scaffold_1057_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18957..19802)
DNA (846bp) protein (282aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
nicotinate-nucleotide pyrophosphorylase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003701685
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1057_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19873..21519
DNA (1647bp) protein (549aa)
ClpB protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKL1_THIDA
ClpB protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 23 items

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