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RTP_07252018_0_1um_scaffold_1140

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_07252018_0_1um_scaffold_1140_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163..1242)
DNA (1080bp) protein (360aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
diaminohydroxyphosphoribosylaminopyrimidine deaminase n=1 Tax=Thiobacillus thioparus RepID=UPI0003638709
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1355..2092)
DNA (738bp) protein (246aa)
ecaA; carbonic anhydrase (EC:4.2.1.1)
Carbonic anhydrase {ECO:0000313|EMBL:AAZ98120.1}; EC=4.2.1.1 {ECO:0000313|EMBL:AAZ98120.1};; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Carbonic anhydrase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGX3_THIDA
RTP_07252018_0_1um_scaffold_1140_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2163..2645)
DNA (483bp) protein (161aa)
NrdR family transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00036D4CDB
nrdR; transcriptional regulator NrdR
Tax=GWE1_Thiobacillus_62_9_curated
RTP_07252018_0_1um_scaffold_1140_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2768..4009)
DNA (1242bp) protein (414aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] id=12496645 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_5
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4075..4887)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI00035EE07B
K+ ion channel
Tax=CG_Beta_01
RTP_07252018_0_1um_scaffold_1140_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4975..6063
DNA (1089bp) protein (363aa)
Transporter, periplasmic component id=1329928 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transporter, periplasmic component
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6066..6692
DNA (627bp) protein (209aa)
putative ubiquinone biosynthesis monooxygenase Coq7; K06134 ubiquinone biosynthesis monooxygenase Coq7 [EC:1.14.13.-] id=12496647 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ubiquinone biosynthesis monooxygenase Coq7
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6820..6945
DNA (126bp) protein (42aa)
hypothetical protein id=1329932 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_9
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7030..7266)
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0003179F8D
Uncharacterized protein {ECO:0000313|EMBL:CDH47114.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein
RTP_07252018_0_1um_scaffold_1140_10
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7357..7713)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI000375639A
Putative uncharacterized protein {ECO:0000313|EMBL:EGV18706.1}; Flags: Precursor;; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
hypothetical protein
RTP_07252018_0_1um_scaffold_1140_11
unknown

Not on your lists

comp(7751..7855)
DNA (105bp) protein (35aa)

This feature has no annotations

RTP_07252018_0_1um_scaffold_1140_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8074..8469
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000369FFE5
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_13
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8517..9512)
DNA (996bp) protein (332aa)
Pyridoxamine 5'-phosphate oxidase-related, FMN binding protein n=1 Tax=Polaromonas sp. CF318 RepID=J2L2N9_9BURK
Pyridoxamine 5'-phosphate oxidase-related, FMN binding protein {ECO:0000313|EMBL:EJL86540.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
pyridoxamine 5'-phosphate oxidase-like protein
RTP_07252018_0_1um_scaffold_1140_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9514..10158)
DNA (645bp) protein (215aa)
Glutathione S-transferase-like protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FT8_POLSJ
glutathione S-transferase-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_15
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10274..11176
DNA (903bp) protein (301aa)
Transcriptional regulator, LysR family n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2H3_THIK1
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADG31306.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
RTP_07252018_0_1um_scaffold_1140_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11264..11596)
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A091E
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11593..13836)
DNA (2244bp) protein (748aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C8859
Elongator protein 3/MiaB/NifB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13945..14271)
DNA (327bp) protein (109aa)
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
peptidyl-prolyl cis-trans isomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DDB97
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14332..15723)
DNA (1392bp) protein (464aa)
C4-dicarboxylate ABC transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00035E8701
TRAP dicarboxylate transporter subunit DctM
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15723..16262)
DNA (540bp) protein (180aa)
TRAP transporter, small subunit id=12498668 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
TRAP transporter, small subunit
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16259..16873)
DNA (615bp) protein (205aa)
putative lipase id=12498667 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
lipase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16870..17265)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BVH2_9GAMM
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1140_23
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17460..18320
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI000370C894
CBS domain protein {ECO:0000313|EMBL:KEA62581.1}; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
hypothetical protein
RTP_07252018_0_1um_scaffold_1140_24
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

18539..19855
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Streptomyces sp. MspMP-M5 RepID=UPI000370FBD9
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
Tax=RBG_13_Chloroflexi_66_10_curated
RTP_07252018_0_1um_scaffold_1140_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19950..20297)
DNA (348bp) protein (116aa)
microcin-processing peptidase 1; K03592 PmbA protein id=12496659 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
microcin-processing peptidase 1
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 25 items

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