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RTP_07252018_0_1um_scaffold_1462

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_07252018_0_1um_scaffold_1462_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1097
DNA (1095bp) protein (365aa)
ubiB; ubiquinone biosynthesis protein UbiB (EC:1.14.13.-)
2-polyprenylphenol 6-hydroxylase id=1320531 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1107..2540
DNA (1434bp) protein (478aa)
sodium/solute symporter id=12495834 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sodium/solute symporter
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_3
Saccharophagus degradans, Saccharophagus, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2799..3533
DNA (735bp) protein (245aa)
OmpA/MotB n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21LE1_SACD2
OmpA/MotB
OmpA/MotB {ECO:0000313|EMBL:ABD80488.1}; TaxID=203122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharophagus.;" source="Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024).;"
RTP_07252018_0_1um_scaffold_1462_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3610..5238)
DNA (1629bp) protein (543aa)
bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase (EC:2.7.1.25 2.7.7.4)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003728723
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5255..6211)
DNA (957bp) protein (319aa)
acetyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003614A5F
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6198..8504)
DNA (2307bp) protein (769aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B2B15
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8501..9757)
DNA (1257bp) protein (419aa)
hypothetical protein id=12493060 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9758..10309)
DNA (552bp) protein (184aa)
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] id=12493059 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
shikimate kinase (EC:2.7.1.71)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10425..12572)
DNA (2148bp) protein (716aa)
Type IV pilus assembly protein PilQ id=1302818 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
type IV pilus assembly protein PilQ
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12602..13099)
DNA (498bp) protein (166aa)
Type IV pilus assembly protein PilP id=1302819 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
type IV pilus assembly protein PilP
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13096..13746)
DNA (651bp) protein (217aa)
pilus assembly protein PilO n=1 Tax=Thiobacillus denitrificans RepID=UPI0003760A28
type IV pilus assembly membrane transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13743..14321)
DNA (579bp) protein (193aa)
fimbrial protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036DFFB2
type IV pilus assembly protein PilN
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14318..15406)
DNA (1089bp) protein (363aa)
fimbrial assembly protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003637EEB
Type IV pilus assembly protein PilM
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15596..17986
DNA (2391bp) protein (797aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
penicillin-binding protein 1A n=1 Tax=Thiobacillus denitrificans RepID=UPI0003772513
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17983..18558
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037AFE04
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18646..19278
DNA (633bp) protein (211aa)
putative glycosyltransferase id=12493051 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
glycosyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1462_17
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19275..19415
DNA (141bp) protein (47aa)
(2Fe-2S) ferredoxin n=1 Tax=Methyloversatilis universalis RepID=UPI0003600BF7
2Fe-2S ferredoxin
Tax=GWA2_Rhodocyclales_65_20_curated
Displaying 17 items

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