ggKbase home page

RTP_07252018_0_1um_scaffold_1715

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_07252018_0_1um_scaffold_1715_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..746
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000377D22E
D-alanyl-D-alanine carboxypeptidase-like protein
D-alanyl-D-alanine carboxypeptidase-like protein {ECO:0000313|EMBL:AAZ96036.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_07252018_0_1um_scaffold_1715_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

897..1853
DNA (957bp) protein (319aa)
hypothetical protein; K07088 id=12497671 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1715_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1850..2740
DNA (891bp) protein (297aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
tartronate semialdehyde reductase n=1 Tax=Thiobacillus thioparus RepID=UPI00035CEDA4
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1715_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2754..3125
DNA (372bp) protein (124aa)
hypothetical protein id=12497673 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1715_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3175..3744
DNA (570bp) protein (190aa)
YceI n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q479L6_DECAR
YceI
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1715_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3810..5267
DNA (1458bp) protein (486aa)
gabD; GabD (EC:1.2.1.16)
Putative succinic semialdehyde dehydrogenase id=1371503 bin=GWE1_T_denit_62_9 species=Azoarcus anaerobius genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1715_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5294..6193
DNA (900bp) protein (300aa)
arginase (EC:3.5.3.1)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000372D819
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_07252018_0_1um_scaffold_1715_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6232..7491)
DNA (1260bp) protein (420aa)
rho; transcription termination factor Rho; K03628 transcription termination factor Rho id=12496042 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rho; transcription termination factor Rho
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1715_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7688..8014)
DNA (327bp) protein (109aa)
thioredoxin
Thioredoxin id=1350671 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1715_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8197..8520
DNA (324bp) protein (108aa)
ferredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B00A9
7Fe ferredoxin
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1715_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8527..11208
DNA (2682bp) protein (894aa)
DNA helicase/exodeoxyribonuclease V subunit B (EC:3.1.11.5)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000381B286
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1715_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11202..12356)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037D4D84
extracellular ligand-binding receptor
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1715_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12492..12812)
DNA (321bp) protein (107aa)
cytochrome C n=1 Tax=Thiobacillus thioparus RepID=UPI00036E0BA7
cytochrome C transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_07252018_0_1um_scaffold_1715_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12934..13722)
DNA (789bp) protein (263aa)
Integral membrane protein id=1370723 bin=GWE1_T_denit_62_9 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_07252018_0_1um_scaffold_1715_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13805..14617)
DNA (813bp) protein (271aa)
thioredoxin n=1 Tax=Thiobacillus thioparus RepID=UPI0003622CE7
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 15 items

View Taxonomy