ggKbase home page

RTP_082018_0_1um_scaffold_7201

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_7201_1
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

295..1167
DNA (873bp) protein (291aa)
RNA polymerase sigma factor rpoD n=1 Tax=Segetibacter koreensis RepID=UPI00035E858E
RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:KIC95338.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
RpoD subfamily RNA polymerase sigma-70 subunit
RTP_082018_0_1um_scaffold_7201_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(1173..1754)
DNA (582bp) protein (194aa)
alkyl hydroperoxide reductase n=1 Tax=Pedobacter agri RepID=UPI00029A0B19
alkyl hydroperoxide reductase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_3
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


1844..2701
DNA (858bp) protein (286aa)
signal recognition particle n=1 Tax=Segetibacter koreensis RepID=UPI000364F953
signal recognition particle protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

2701..2973
DNA (273bp) protein (91aa)
Signal recognition particle 54 kDa protein suspected. See adjacent gene [RTP_082018_0_1um_scaffold_7201_3].
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
signal recognition particle n=1 Tax=Segetibacter koreensis RepID=UPI000364F953
signal recognition particle subunit FFH/SRP54 (srp54)
RTP_082018_0_1um_scaffold_7201_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


3068..3490
DNA (423bp) protein (141aa)
30S ribosomal protein S16 n=1 Tax=Segetibacter koreensis RepID=UPI0003720DEA
30S ribosomal protein S16
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

3444..3959
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003604F01
16S rRNA processing protein RimM
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(3964..5394)
DNA (1431bp) protein (477aa)
Peptidase, S41 family n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W3F5_9FLAO
peptidase S41
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

5473..6654
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003754693
DNA polymerase IV
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

6713..7348
DNA (636bp) protein (212aa)
Peroxidase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L3X6_HALH1
peroxidase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

7432..8625
DNA (1194bp) protein (398aa)
Amidohydrolase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TRS9_NIAKG
amidohydrolase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(8563..8991)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035C1355
pseudouridine synthase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(8988..10043)
DNA (1056bp) protein (352aa)
Pseudouridine synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TRT1_NIAKG
pseudouridine synthase Rsu
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(10040..11167)
DNA (1128bp) protein (376aa)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TRT3_NIAKG
23S rRNA m(2)A-2503 methyltransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_14
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

11189..12277
DNA (1089bp) protein (363aa)
Acetyl-CoA acetyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TRT6_NIAKG
acetyl-CoA acetyltransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

12357..12752
DNA (396bp) protein (132aa)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


comp(12715..14082)
DNA (1368bp) protein (456aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035EB245
histidyl-tRNA synthetase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

14269..14502
DNA (234bp) protein (78aa)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

14532..15422
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000374CE3D
phosphate ABC transporter substrate-binding protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_7201_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

15450..15686
DNA (237bp) protein (79aa)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying 19 items

View Taxonomy