ggKbase home page

RTP_082018_0_1um_scaffold_2037

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_2037_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(1..165)
DNA (165bp) protein (55aa)
Glycosyl transferase group 1 id=3724903 bin=GWF2_Bacteroidetes_35_48 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(167..1198)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0PKC7_ELIME
glycosidase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_3
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(1195..1560)
DNA (366bp) protein (122aa)
Cupin 2 barrel domain-containing protein id=3522889 bin=GWF2_Bacteroidetes_43_63 species=Mucilaginibacter paludis genus=Mucilaginibacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77
cupin domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(1634..2194)
DNA (561bp) protein (187aa)
Transcriptional regulator, AraC family n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KVT2_HALH1
AraC family transcriptional regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

2415..2960
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Joostella marina DSM 19592 RepID=I3C718_9FLAO
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

2957..3826
DNA (870bp) protein (290aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SGW2_9FLAO
ABC transporter
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

3811..4641
DNA (831bp) protein (277aa)
ABC transporter, permease protein, ABC-2 family n=1 Tax=Formosa agariphila KMM 3901 RepID=T2KK30_9FLAO
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

4641..5300
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Formosa agariphila KMM 3901 RepID=T2KIR1_9FLAO
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

5316..5891
DNA (576bp) protein (192aa)
Ribosomal protein L11 methyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKV9_NIAKG
50S ribosomal protein L11 methyltransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(5899..6948)
DNA (1050bp) protein (350aa)
Esterase/lipase/thioesterase family protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SGE0_9FLAO
Esterase/lipase/thioesterase family protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(6978..7802)
DNA (825bp) protein (275aa)
Aminotransferase class IV n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XWV6_PEDHD
class IV aminotransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(7799..8881)
DNA (1083bp) protein (361aa)
Peptidase S58 DmpA n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XWV7_PEDHD
peptidase S58 DmpA
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(8888..9721)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI0003665FCE
UspA domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_14
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(9729..10688)
DNA (960bp) protein (320aa)
Proline iminopeptidase n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TVZ3_MARTH
proline-specific peptidase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(10717..11973)
DNA (1257bp) protein (419aa)
Natural resistance-associated macrophage protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KSQ3_HALH1
natural resistance-associated macrophage protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(11970..12578)
DNA (609bp) protein (203aa)
Oxidoreductase, 2OG-Fe(II) oxygenase family protein n=1 Tax=Mariniradius saccharolyticus AK6 RepID=M7XXA1_9BACT
DNA repair system specific for alkylated DNA
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(12587..13348)
DNA (762bp) protein (254aa)
geranylgeranylglyceryl phosphate synthase n=1 Tax=Segetibacter koreensis RepID=UPI00037CAC12
geranylgeranylglyceryl phosphate synthase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

13611..16736
DNA (3126bp) protein (1042aa)
ribonucleotide-diphosphate reductase subunit alpha n=1 Tax=Segetibacter koreensis RepID=UPI000367D1A5
ribonucleoside-diphosphate reductase class II
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

16847..17569
DNA (723bp) protein (241aa)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_20
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

17656..19398
DNA (1743bp) protein (581aa)
GMC family oxidoreductase n=1 Tax=Segetibacter koreensis RepID=UPI0003722B4A
GMC family oxidoreductase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

19430..20062
DNA (633bp) protein (211aa)
transcriptional initiation protein Tat n=1 Tax=Niabella aurantiaca RepID=UPI00037AB665
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_2037_22
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20790..21635)
DNA (846bp) protein (282aa)
WGS project CAIT00000000 data, contig 3 n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GN18_9BACT
Integrase catalytic region {ECO:0000313|EMBL:CDH45855.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
IS2 transposase TnpB
RTP_082018_0_1um_scaffold_2037_23
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21608..21898)
DNA (291bp) protein (97aa)
Low calcium response locus protein S n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GL11_9BACT
Low calcium response locus protein S {ECO:0000313|EMBL:CCH54587.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
transposase IS3/IS911 family protein
RTP_082018_0_1um_scaffold_2037_24
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22137..22553
DNA (417bp) protein (139aa)
Aminopeptidase N-like protein id=4498530 bin=GWF2_Bacteroidetes_41_31 species=Flavobacterium sp. F52 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
membrane protein, putative
Tax=GWF2_Bacteroidetes_41_31_curated
RTP_082018_0_1um_scaffold_2037_25
Flavobacterium aquatile, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22654..25809)
DNA (3156bp) protein (1052aa)
Uncharacterized protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SET0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGD66893.1}; TaxID=1453498 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium aquatile LMG 4008.;"
membrane protein, putative
RTP_082018_0_1um_scaffold_2037_26
Flavobacterium aquatile, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25809..26678)
DNA (870bp) protein (290aa)
ABC transporter ATP-binding protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SG13_9FLAO
Multidrug ABC transporter ATPase {ECO:0000313|EMBL:KGD66892.1}; TaxID=1453498 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium aquatile LMG 4008.;"
ABC transporter-like protein
RTP_082018_0_1um_scaffold_2037_27
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26779..26958)
DNA (180bp) protein (60aa)
XRE family transcriptional regulator n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SF45_9FLAO
Cro/Cl family transcriptional regulator {ECO:0000313|EMBL:KFF11989.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
XRE family transcriptional regulator
RTP_082018_0_1um_scaffold_2037_28
Flavobacterium aquatile, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26988..27506)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FIF3_FLAJ1
Uncharacterized protein {ECO:0000313|EMBL:KGD66889.1}; TaxID=1453498 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium aquatile LMG 4008.;"
hypothetical protein
RTP_082018_0_1um_scaffold_2037_29
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27634..28449
DNA (816bp) protein (272aa)
Putative HTH-type transcriptional regulator in mcrB 3'region n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GG99_9BACT
Putative HTH-type transcriptional regulator in mcrB 3'region {ECO:0000313|EMBL:CDN76576.1}; TaxID=1117645 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis.;"
AraC family transcriptional regulator
RTP_082018_0_1um_scaffold_2037_30
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

28523..28996
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Elizabethkingia anophelis RepID=L8K8E1_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CDN76577.1}; TaxID=1117645 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis.;"
hypothetical protein
Displaying items 1-30 of 49 in total

View Taxonomy