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RTP_082018_0_1um_scaffold_1517

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_1517_1
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..138)
DNA (138bp) protein (46aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00036691CF
hypothetical protein
Strain DSM 12611 Contig03, whole genome shotgun sequence {ECO:0000313|EMBL:KIO54395.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
RTP_082018_0_1um_scaffold_1517_2
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(223..531)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VZV4_9FLAO
Excisionase {ECO:0000313|EMBL:KEQ29851.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
uncharacterized protein
RTP_082018_0_1um_scaffold_1517_3
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(556..909)
DNA (354bp) protein (118aa)
DNA-binding protein n=1 Tax=Empedobacter brevis RepID=UPI000366D70E
Uncharacterized protein {ECO:0000313|EMBL:GAE65848.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
uncharacterized protein
RTP_082018_0_1um_scaffold_1517_4
unknown

Not on your lists

1026..1160
DNA (135bp) protein (45aa)

This feature has no annotations

RTP_082018_0_1um_scaffold_1517_5
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1161..2006)
DNA (846bp) protein (282aa)
RteC protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VZV2_9FLAO
Tetracycline regulation of excision, RteC {ECO:0000313|EMBL:KGO08670.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
regulatory protein RteC family protein
RTP_082018_0_1um_scaffold_1517_6
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2293..2646)
DNA (354bp) protein (118aa)
LuxR family transcriptional regulator {ECO:0000313|EMBL:KFF04079.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
Two component transcriptional regulator, LuxR family id=3708415 bin=GWA2_Bacteroidetes_42_15 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
two component LuxR family transcriptional regulator
RTP_082018_0_1um_scaffold_1517_7
Flavobacterium branchiophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2810..3400
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium branchiophilum (strain FL-15) RepID=G2Z0I9_FLABF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB69383.1}; TaxID=1034807 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium branchiophilum (strain FL-15).;"
RTP_082018_0_1um_scaffold_1517_8
unknown

Not on your lists

3407..4966
DNA (1560bp) protein (520aa)

This feature has no annotations

RTP_082018_0_1um_scaffold_1517_9
Flavobacterium branchiophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5093..5683
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium branchiophilum (strain FL-15) RepID=G2Z0I9_FLABF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB69383.1}; TaxID=1034807 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium branchiophilum (strain FL-15).;"
RTP_082018_0_1um_scaffold_1517_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(5759..6172)
DNA (414bp) protein (138aa)
DNA polymerase III subunit beta n=1 Tax=Segetibacter koreensis RepID=UPI000374CFFB
DNA polymerase III subunit beta
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(6165..6815)
DNA (651bp) protein (217aa)
DNA polymerase III subunit beta n=1 Tax=Segetibacter koreensis RepID=UPI000374CFFB
DNA polymerase III subunit beta
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(6829..7203)
DNA (375bp) protein (125aa)
Receiver protein of a two-component response regulator n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SFI2_LEPBA
putative two-component response regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

7287..7769
DNA (483bp) protein (161aa)
Regulatory protein RecX n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDV2_NIAKG
regulatory protein RecX
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_14
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

7766..8689
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029B2B38
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

8712..9506
DNA (795bp) protein (265aa)
carbon-nitrogen hydrolase n=1 Tax=Niabella aurantiaca RepID=UPI00035FDF4D
carbon-nitrogen hydrolase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

9497..10219
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036B3C81
N-acetylglucosamine-6-phosphate deacetylase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

10252..10638
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IH69_FLUTR
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(10777..11973)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003700F72
peptidase S41
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(11976..13007)
DNA (1032bp) protein (344aa)
thiamine-monophosphate kinase n=1 Tax=Segetibacter koreensis RepID=UPI00036208A4
thiamine-monophosphate kinase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_20
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(13017..13793)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035F017D
inositol-phosphate phosphatase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

13836..14696
DNA (861bp) protein (287aa)
Putative glycosyltransferase id=4372190 bin=GWF2_Bacteroidetes_41_31 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
putative glycosyltransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_22
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

14764..16287
DNA (1524bp) protein (508aa)
GH3 auxin-responsive promoter n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCK0_NIAKG
GH3 auxin-responsive promoter
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_23
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

16284..16937
DNA (654bp) protein (218aa)
Peptidyl-prolyl cis-trans isomerase cyclophilin type n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SM98_PLABD
cyclophilin type peptidyl-prolyl cis-trans isomerase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_24
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

16989..17645
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036EC6DB
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_25
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

17675..18376
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000367E3DB
monofunctional biosynthetic peptidoglycan transglycosylase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_26
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(18373..18915)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035D5CAD
NAD metabolism ATPase/kinase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_27
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(18902..19534)
DNA (633bp) protein (211aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCJ4_NIAKG
nicotinamide mononucleotide transporter PnuC
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_28
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(19531..21051)
DNA (1521bp) protein (507aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y076_9SPHI
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_29
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(21081..21680)
DNA (600bp) protein (200aa)
thioredoxin n=1 Tax=Segetibacter koreensis RepID=UPI0003660D82
Scaffold protein Nfu/NifU
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1517_30
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

21876..23123
DNA (1248bp) protein (416aa)
Endoglucanase (EC:3.2.1.4)
Uncharacterized protein n=1 Tax=Bacteroides sp. D2 RepID=E5CBE2_9BACE
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying items 1-30 of 39 in total

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