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RTP_082018_0_1um_scaffold_6733

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_6733_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(1..114)
DNA (114bp) protein (38aa)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

197..661
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7NA92_9BACT
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_3
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

703..4122
DNA (3420bp) protein (1140aa)
transcription-repair coupling factor n=1 Tax=Segetibacter koreensis RepID=UPI00037008A6
transcription-repair coupling factor
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(4185..4391)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000373AD3D
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(4459..5913)
DNA (1455bp) protein (485aa)
DNA-cytosine methyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI0003670253
DNA gyrase subunit B
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(5894..6364)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000373A419
DNA gyrase subunit B
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

6518..7441
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000374C538
AraC family transcriptional regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(7449..8492)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036DAD90
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(8549..9541)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036DAC2B
D-isomer specific 2-hydroxyacid dehydrogenase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9654..12941
DNA (3288bp) protein (1096aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S4R9_PEDSD
RTP_082018_0_1um_scaffold_6733_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

12947..13078
DNA (132bp) protein (44aa)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

13038..13850
DNA (813bp) protein (271aa)
Transcriptional regulator, TraR/DksA family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMF8_NIAKG
TraR/DksA family transcriptional regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(13900..15777)
DNA (1878bp) protein (626aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000365BE23
xenobiotic-transporting ATPase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_14
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

15791..16150
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003700443
ribosome-binding factor A
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

16147..17352
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036576D3
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(17381..18196)
DNA (816bp) protein (272aa)
transketolase n=1 Tax=Niabella aurantiaca RepID=UPI000365132C
transketolase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

18198..18647
DNA (450bp) protein (150aa)
Ribosome-recycling factor n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PER6_CHIPD
ribosome recycling factor
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(18648..19430)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL95_NIAKG
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

19582..20328
DNA (747bp) protein (249aa)
Polyphosphate:AMP phosphotransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL94_NIAKG
Polyphosphate:AMP phosphotransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_20
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

20357..20800
DNA (444bp) protein (148aa)
Large-conductance mechanosensitive channel n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SDQ9_9FLAO
Large-conductance mechanosensitive channel
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

20878..21693
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037673B7
condensin subunit ScpA
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_22
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(21767..24067)
DNA (2301bp) protein (767aa)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL89_NIAKG
1-deoxy-D-xylulose-5-phosphate synthase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_23
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

24193..25179
DNA (987bp) protein (329aa)
Putative signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL88_NIAKG
putative signal transduction histidine kinase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_24
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

25203..25934
DNA (732bp) protein (244aa)
transcriptional regulator n=1 Tax=Segetibacter koreensis RepID=UPI000379C942
LytTR family two component transcriptional regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_25
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

25949..27241
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A2ADF
putative aminopeptidase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_26
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(27252..27740)
DNA (489bp) protein (163aa)
Putative uncharacterized protein id=1900165 bin=GWE2_Bacteroidetes_39_28 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_39_28 organism_group=Bacteroidetes
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_6733_27
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

27917..28330
DNA (414bp) protein (138aa)
Uncharacterized protein id=2669582 bin=GWF2_Bacteroidetes_41_61 species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying 27 items

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