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RTP_082018_0_1um_scaffold_676

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_676_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

3..2990
DNA (2988bp) protein (996aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000368FB40
condensin subunit Smc
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

3008..4027
DNA (1020bp) protein (340aa)
peptide chain release factor 3 n=1 Tax=Niabella aurantiaca RepID=UPI00037A8AAF
peptide chain release factor 3
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_3
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

4003..4278
DNA (276bp) protein (92aa)
Peptide chain release factor 3 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDB6_NIAKG
peptide chain release factor 3 (bRF-3)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

4324..5577
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00034891D4
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

5588..7075
DNA (1488bp) protein (496aa)
Peptidase M61 domain protein id=4263681 bin=GWC2_Bacteroidetes_40_22 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
peptidase M61 domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

7173..7760
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9E935_9FLAO
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

7769..8035
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Nonlabens dokdonensis (strain DSM 17205 / KCTC 12402 / DSW-6) RepID=L7WD25_NONDD
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

8078..9388
DNA (1311bp) protein (437aa)
ribosomal protein S12 methylthiotransferase n=1 Tax=Segetibacter koreensis RepID=UPI000382110D
30S ribosomal protein S12
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(9405..10952)
DNA (1548bp) protein (516aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036EC8FB
aromatic hydrocarbon degradation membrane protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(10965..11783)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037FB377
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


11895..13280
DNA (1386bp) protein (462aa)
prolyl-tRNA synthetase n=1 Tax=Segetibacter koreensis RepID=UPI0003802BD4
prolyl-tRNA synthetase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

13293..14237
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XND1_FLAIG
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

14237..15310
DNA (1074bp) protein (358aa)
Peptidase M48 Ste24p n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EVT2_EMTOG
peptidase M48 Ste24p
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_14
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

15312..16022
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035C7730
tRNA pseudouridine synthase B
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(16011..18398)
DNA (2388bp) protein (796aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037764D6
surface antigen (D15)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

18404..19129
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036C9842
tRNA/rRNA methyltransferase SpoU
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(19134..20366)
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000372EEEE
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

20432..21709
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003751EC8
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

21778..21897
DNA (120bp) protein (40aa)
Cold-shock DNA-binding domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PCQ8_CHIPD
cold-shock DNA-binding domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_20
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

22032..22619
DNA (588bp) protein (196aa)
Purine nucleoside phosphorylase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQP5_NIAKG
purine nucleoside phosphorylase I
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

22630..24630
DNA (2001bp) protein (667aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000376E4B7
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_22
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(24623..25945)
DNA (1323bp) protein (441aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPA4_NIAKG
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_23
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(25908..26465)
DNA (558bp) protein (186aa)
RNA pseudouridine synthase n=1 Tax=Dyadobacter beijingensis RepID=UPI00037380A9
pseudouridine synthase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_24
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(26504..28228)
DNA (1725bp) protein (575aa)
Sensory box sensor histidine kinase/response regulator, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZGG7_9BACT
histidine kinase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_25
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

28245..30101
DNA (1857bp) protein (619aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000374BB60
ABC transporter
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_26
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(30107..30568)
DNA (462bp) protein (154aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFF3_NIAKG
Peptidylprolyl isomerase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_27
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

30608..31258
DNA (651bp) protein (217aa)
Transaldolase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUD5_CHIPD
translaldolase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_28
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31336..33477)
DNA (2142bp) protein (714aa)
Prolyl endopeptidase {ECO:0000313|EMBL:EOR93734.1}; EC=3.4.21.26 {ECO:0000313|EMBL:EOR93734.1};; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036A4E29
prolyl oligopeptidase
RTP_082018_0_1um_scaffold_676_29
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(33516..34208)
DNA (693bp) protein (231aa)
Putative DNA alkylation repair enzyme n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FXB1_ECHVK
DNA alkylation repair enzyme
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_676_30
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(34234..36993)
DNA (2760bp) protein (920aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI00036AED7C
dipeptidyl aminopeptidase/acylaminoacyl peptidase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying items 1-30 of 98 in total

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