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RTP_082018_0_1um_scaffold_3110

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_3110_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..605
DNA (603bp) protein (201aa)
riboflavin synthase subunit alpha (EC:2.5.1.9)
Lumazine-binding protein id=1329922 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_3110_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

605..1690
DNA (1086bp) protein (362aa)
bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein (EC:3.5.4.25 4.1.2.-)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI000360BCCA
RTP_082018_0_1um_scaffold_3110_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1709..2176
DNA (468bp) protein (156aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000255|HAMAP-Rule:MF_00178}; Short=DMRL synthase {ECO:0000255|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000255|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000255|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000255|HAMAP-Rule:MF_00178};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RISB_THIDA
RTP_082018_0_1um_scaffold_3110_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2178..2615
DNA (438bp) protein (146aa)
nitrogen utilization protein B n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E3448
NusB antitermination factor
N utilization substance protein B homolog {ECO:0000255|HAMAP-Rule:MF_00073}; Short=Protein NusB {ECO:0000255|HAMAP-Rule:MF_00073};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_3110_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2758..4092
DNA (1335bp) protein (445aa)
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
thiamine monophosphate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI000365663B
RTP_082018_0_1um_scaffold_3110_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4080..4577
DNA (498bp) protein (166aa)
CinA protein id=1371378 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
CinA protein
CinA protein {ECO:0000313|EMBL:AAZ98148.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_3110_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4671..5561)
DNA (891bp) protein (297aa)
Putative uncharacterized protein id=1371377 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98149.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_3110_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5737..6780
DNA (1044bp) protein (348aa)
recombinase RecA n=1 Tax=Thiobacillus thioparus RepID=UPI00037D51CF
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_3110_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6764..7255
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003726CC9
regulatory protein RecX
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_3110_10
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7473..7916)
DNA (444bp) protein (148aa)
Type IV pilus biogenesis protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3ITP6_9GAMM
Type IV pilus biogenesis protein {ECO:0000313|EMBL:EGW22567.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
pilA; type 4 major prepilin protein
RTP_082018_0_1um_scaffold_3110_11
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8356..8961)
DNA (606bp) protein (202aa)
Putative uncharacterized protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N2G7_9GAMM
Tax=RBG_16_Gamma2_60_9_curated
RTP_082018_0_1um_scaffold_3110_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9651..10358
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Methylotenera RepID=UPI00036AC225
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
RTP_082018_0_1um_scaffold_3110_13
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10499..11818
DNA (1320bp) protein (440aa)
Replication initiation factor n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GL20_NITSI
replication initiation factor
Replication initiation factor {ECO:0000313|EMBL:AEJ01793.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
RTP_082018_0_1um_scaffold_3110_14

Not on your lists

11818..12177
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PTM1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBH98278.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_082018_0_1um_scaffold_3110_trna_1
unknown

Not on your lists

comp(13126..13198)
DNA (73bp)
transferRNA Lys
RTP_082018_0_1um_scaffold_3110_15
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13445..14122)
DNA (678bp) protein (226aa)
alkyl hydroperoxide reductase id=12496622 bin=THIO_MID species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
alkyl hydroperoxide reductase
Thioredoxin {ECO:0000313|EMBL:AKH37396.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
RTP_082018_0_1um_scaffold_3110_16
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14144..14509)
DNA (366bp) protein (122aa)
hypothetical protein; K07112 id=12496621 bin=THIO_MID species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_082018_0_1um_scaffold_3110_17
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14506..15222)
DNA (717bp) protein (239aa)
hypothetical protein; K07112 id=12496621 bin=THIO_MID species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE11928.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
RTP_082018_0_1um_scaffold_3110_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15327..16010)
DNA (684bp) protein (228aa)
7-cyano-7-deazaguanine synthase id=1336255 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ExsB ATPase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_3110_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16007..16729)
DNA (723bp) protein (241aa)
radical activating enzyme; K10026 queuosine biosynthesis protein QueE id=12494368 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
radical activating enzyme
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_3110_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16748..17581)
DNA (834bp) protein (278aa)
TPR repeat-containing protein id=12496618 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
TPR repeat-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_3110_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17591..18187)
DNA (597bp) protein (199aa)
peptidoglycan-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003652516
outer membrane protein, porin-associated lipoprotein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_3110_22
unknown

Not on your lists

comp(18220..18534)
DNA (315bp) protein (105aa)

This feature has no annotations

RTP_082018_0_1um_scaffold_3110_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18585..19859)
DNA (1275bp) protein (425aa)
tolB; translocation protein TolB; K03641 TolB protein id=12496616 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
tolB; translocation protein TolB
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_3110_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20014..20883)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A7344
TonB protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_3110_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20880..21290)
DNA (411bp) protein (137aa)
biopolymer transporter ExbD n=1 Tax=Thiobacillus denitrificans RepID=UPI0003725F1A
biopolymer transport protein ExbD/TolR
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_3110_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21294..21986)
DNA (693bp) protein (231aa)
protein tolQ n=1 Tax=Thiobacillus thioparus RepID=UPI0003721D4E
MotA/TolQ/ExbB proton channel family protein
MotA/TolQ/ExbB proton channel family {ECO:0000313|EMBL:AAZ98162.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_3110_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21983..22384)
DNA (402bp) protein (134aa)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037503D9
4-hydroxybenzoyl-CoA thioesterase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_3110_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22387..23418)
DNA (1032bp) protein (344aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction ATP-dependent DNA helicase RuvB id=1336264 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_3110_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23428..24006)
DNA (579bp) protein (193aa)
DNA recombination protein, RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] id=12494359 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000255|HAMAP-Rule:MF_00031}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_00031};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
DNA recombination protein, RuvA
Displaying items 1-30 of 34 in total

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