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RTP_082018_0_1um_scaffold_1113

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_1113_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41..946)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037DC0DB
LysR family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_1113_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1058..1756
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037285E1
Pirin domain-containing protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_1113_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1820..2395
DNA (576bp) protein (192aa)
FMN reductase n=1 Tax=Thiobacillus thioparus RepID=UPI000370E382
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1113_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2450..2689)
DNA (240bp) protein (80aa)
hypothetical protein id=1348262 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1113_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3010..3399)
DNA (390bp) protein (130aa)
hypothetical protein id=12493783 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1113_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3502..5469)
DNA (1968bp) protein (656aa)
acetyl-CoA synthetase (EC:6.2.1.1)
Acetyl-coenzyme A synthetase id=1348264 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1113_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5537..8230
DNA (2694bp) protein (898aa)
glutamate-ammonia-ligase adenylyltransferase (EC:2.7.7.42)
Glutamate-ammonia-ligase adenylyltransferase id=1348265 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1113_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8241..10859)
DNA (2619bp) protein (873aa)
cation-transporting ATPase, E1-E2 type (EC:3.6.3.8)
ATPase n=1 Tax=Thiobacillus thioparus RepID=UPI000376E0A2
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1113_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10941..11090)
DNA (150bp) protein (50aa)
Mechanosensitive ion channel id=1329035 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
mechanosensitive ion channel MscS
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1113_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11094..11846)
DNA (753bp) protein (251aa)
Mechanosensitive ion channel id=1329035 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
mechanosensitive ion channel MscS
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1113_11
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11858..14245)
DNA (2388bp) protein (796aa)
sucrose synthase (EC:2.4.1.13)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003729A6F
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
RTP_082018_0_1um_scaffold_1113_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14242..16398)
DNA (2157bp) protein (719aa)
sucrose-phosphate phosphatase (EC:2.4.1.14)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003798335
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1113_13
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16391..17359)
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036986DA
PfkB domain-containing protein
Tax=CG_Rhodof_03
RTP_082018_0_1um_scaffold_1113_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17645..18739
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F3E22
thioredoxin
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1113_15
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18788..19177)
DNA (390bp) protein (130aa)
Uncharacterized protein {ECO:0000313|EMBL:KDN96070.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
RTP_082018_0_1um_scaffold_1113_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19378..20610
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000375C0A2
sodium/hydrogen exchanger
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_1113_17
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20626..24504)
DNA (3879bp) protein (1293aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D44A0D
PAS domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
RTP_082018_0_1um_scaffold_1113_18
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24530..24985)
DNA (456bp) protein (152aa)
chemotaxis protein CheY n=1 Tax=Pseudomonas caeni RepID=UPI0003B6E9F8
Uncharacterized protein {ECO:0000313|EMBL:KIF82474.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
response regulator receiver protein
RTP_082018_0_1um_scaffold_1113_19
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24982..28350)
DNA (3369bp) protein (1123aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00037FDE6D
Uncharacterized protein {ECO:0000313|EMBL:GAO35656.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
diguanylate cyclase
RTP_082018_0_1um_scaffold_1113_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28367..29434)
DNA (1068bp) protein (356aa)
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Pseudomonas sp. HPB0071 RepID=N2IYF1_9PSED
CheB protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1113_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29431..29970)
DNA (540bp) protein (180aa)
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Azoarcus sp. KH32C RepID=H0PW28_9RHOO
cheD; chemotaxis protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1113_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29972..30772)
DNA (801bp) protein (267aa)
cheR2; protein CheR2 (EC:2.1.1.80)
Chemotaxis protein methyltransferase n=1 Tax=Pseudomonas fluorescens F113 RepID=G8QAF7_PSEFL
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1113_23
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30787..31143)
DNA (357bp) protein (119aa)
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein id=12494863 bin=THIO_HI species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Histidine kinase {ECO:0000313|EMBL:GAO37383.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
methyl-accepting chemotaxis sensory transducer
Displaying 23 items

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