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RTP_082018_0_1um_scaffold_1414

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_1414_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1584)
DNA (1584bp) protein (528aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037398D4
chemotaxis sensory transducer
Chemotaxis sensory transducer {ECO:0000313|EMBL:AAZ96613.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_1414_2
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1729..2145)
DNA (417bp) protein (139aa)
Uncharacterized protein id=1342611 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=CG_Hydro_01
RTP_082018_0_1um_scaffold_1414_3
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2431..4830
DNA (2400bp) protein (800aa)
diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) id=12498226 bin=THIO_MID species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ADE13032.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
RTP_082018_0_1um_scaffold_1414_4
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5162..6814
DNA (1653bp) protein (551aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00036C3832
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EGW20703.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
PAS domain-containing protein
RTP_082018_0_1um_scaffold_1414_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6830..8062)
DNA (1233bp) protein (411aa)
hypothetical protein id=12498222 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1414_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8067..9026)
DNA (960bp) protein (320aa)
hypothetical protein id=12498221 bin=THIO_MID species=Acidithiobacillus caldus genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative uncharacterized protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1414_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9026..10474)
DNA (1449bp) protein (483aa)
hypothetical protein id=12498220 bin=THIO_MID species=Acidithiobacillus ferrivorans genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1414_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10695..11027)
DNA (333bp) protein (111aa)
assimilatory nitrite reductase (NAD(P)H) small subunit (EC:1.7.1.4)
Nitrite reductase (NAD(P)H) small subunit id=1362113 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1414_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11041..13497)
DNA (2457bp) protein (819aa)
assimilatory nitrite reductase (NAD(P)H) large subunit (EC:1.7.1.4)
Nitrite and sulfite reductase iron-sulfur/siroheme-binding site id=1362112 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_1414_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13708..14673)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003787904
anthranilate phosphoribosyltransferase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1414_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14699..17380)
DNA (2682bp) protein (894aa)
assimilatory nitrate reductase (NADH) subunit alpha apoprotein (EC:1.7.1.1)
nitrate reductase subunit alpha n=1 Tax=Thiobacillus denitrificans RepID=UPI000366CFA2
Assimilatory nitrate reductase {ECO:0000313|EMBL:AAZ98263.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_1414_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17613..17984)
DNA (372bp) protein (124aa)
6-pyruvoyl tetrahydrobiopterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] id=12493611 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
6-pyruvoyl tetrahydrobiopterin synthase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1414_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18085..18531
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003628E61
rhodanese-related sulfurtransferase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1414_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18595..19731)
DNA (1137bp) protein (379aa)
Putative rubredoxin reductase id=1322704 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rubredoxin reductase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1414_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19804..19977)
DNA (174bp) protein (58aa)
rubredoxin n=1 Tax=Thiobacillus thioparus RepID=UPI00036260B0
rubredoxin
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1414_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20015..20488)
DNA (474bp) protein (158aa)
Rubrerythrin/nigerythrin-like protein id=1322706 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rubrerythrin/nigerythrin-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1414_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

20663..21097
DNA (435bp) protein (145aa)
Uncharacterized protein id=12493605 bin=THIO_HI species=Nitrococcus mobilis genus=Nitrococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
RTP_082018_0_1um_scaffold_1414_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21106..24183)
DNA (3078bp) protein (1026aa)
multidrug transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00037E3A8C
RND efflux transporter
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1414_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24248..25387)
DNA (1140bp) protein (380aa)
Secretion protein HlyD id=1322709 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
secretion protein HlyD
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1414_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25384..25920)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003618303
secretion protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 20 items

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