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RTP_082018_0_1um_scaffold_1426

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_1426_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82..1269
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D2CBC
permease
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1426_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1629..2333
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003782466
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98205.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_1426_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2377..2700
DNA (324bp) protein (108aa)
transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00035DF00F
transport-associated
Transport-associated {ECO:0000313|EMBL:AAZ98204.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_1426_4
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2741..2965
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SJX4_METPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM95863.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
RTP_082018_0_1um_scaffold_1426_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3140..3622
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A5E0F
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1426_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3718..6249)
DNA (2532bp) protein (844aa)
ligD; ATP-dependent DNA ligase (EC:6.5.1.1)
DNA ligase, ATP-dependent, putative n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGP7_THIDA
DNA ligase, ATP-dependent, putative {ECO:0000313|EMBL:AAZ98200.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_1426_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6269..7189)
DNA (921bp) protein (307aa)
Probable DNA repair protein Tbd_2246 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGP8_THIDA
Ku-like DNA-end-binding protein
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_1426_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7231..8187)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367BABB
cytochrome c family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1426_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8184..8852)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381040D
cytochrome c-type protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1426_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9018..9554)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00038237D4
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1426_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9730..11157)
DNA (1428bp) protein (476aa)
cardiolipin synthetase 2 (EC:2.7.8.-)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000376B07B
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1426_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11201..11602)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003627118
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1426_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11599..11973)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000373F36E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98194.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_1426_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12004..12318)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C0630
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98193.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_1426_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12725..12898
DNA (174bp) protein (58aa)
UPF0391 membrane protein Tbd_2239 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Y2239_THIDA
hypothetical protein
UPF0391 membrane protein Tbd_2239 {ECO:0000255|HAMAP-Rule:MF_01361}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_1426_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13055..13219
DNA (165bp) protein (55aa)
hypothetical protein id=12498265 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_1426_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13268..13903
DNA (636bp) protein (212aa)
hisitidine kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00037C408C
LuxR family transcriptional regulator
Two Component Transcriptional Regulator, LuxR family {ECO:0000313|EMBL:AAZ98190.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_1426_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13872..14330
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000362E21A
response regulator receiver domain-containing protein
Response regulator receiver domain protein (CheY) {ECO:0000313|EMBL:AAZ98189.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_1426_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14327..15769)
DNA (1443bp) protein (481aa)
histidine kinase (EC:2.7.3.-)
Histidine Kinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGQ9_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1426_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15947..16090
DNA (144bp) protein (48aa)
lipoprotein transmembrane id=12498269 bin=THIO_MID species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
lipoprotein transmembrane
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_1426_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16144..16728
DNA (585bp) protein (195aa)
Putative bacterioferritin (Cytochrome b1) n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGR1_THIDA
bacterioferritin
Putative bacterioferritin (Cytochrome b1) {ECO:0000313|EMBL:AAZ98186.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_1426_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16725..17996)
DNA (1272bp) protein (424aa)
murein transglycosylase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003614537
membrane-bound lytic murein transglycosylase A
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1426_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18057..18149
DNA (93bp) protein (31aa)
hypothetical protein id=1350884 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1426_24
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18187..19047)
DNA (861bp) protein (287aa)
Pirin-like protein n=2 Tax=Nitrosococcus oceani RepID=Q3JB41_NITOC
pirin
Quercetin 2,3-dioxygenase {ECO:0000313|EMBL:KFI19683.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
RTP_082018_0_1um_scaffold_1426_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19131..19514)
DNA (384bp) protein (128aa)
cobalt transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00037B613C
apaG; ApaG protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1426_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19749..20432
DNA (684bp) protein (228aa)
cbbE; ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
ribulose-phosphate 3-epimerase n=1 Tax=Thiobacillus thioparus RepID=UPI00036656AD
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_1426_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20566..21246
DNA (681bp) protein (227aa)
cbbZ; phosphoglycolate phosphatase (EC:3.1.3.18)
phosphoglycolate phosphatase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003618094
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_1426_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21366..22841
DNA (1476bp) protein (492aa)
anthranilate synthase, component I (EC:4.1.3.27)
anthranilate synthase subunit I n=1 Tax=Thiobacillus thioparus RepID=UPI0003802C3F
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_1426_29
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22944..23174
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255A748
Uncharacterized protein {ECO:0000313|EMBL:KFN45865.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
hypothetical protein
RTP_082018_0_1um_scaffold_1426_30
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23167..23961
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255A749
Uncharacterized protein {ECO:0000313|EMBL:KFN45864.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
hypothetical protein
Displaying items 1-30 of 31 in total

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