ggKbase home page

RTP_082018_0_1um_scaffold_423

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_423_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1307)
DNA (1305bp) protein (435aa)
diguanylate cyclase id=12495108 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
diguanylate cyclase/phosphodiesterase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1590..2666
DNA (1077bp) protein (359aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E2A71
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2907..4643
DNA (1737bp) protein (579aa)
DNA polymerase subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III subunit gamma/tau n=1 Tax=Thiobacillus thioparus RepID=UPI000373D07E
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4640..4966
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036D7504
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_423_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4971..5564
DNA (594bp) protein (198aa)
Recombination protein RecR id=1320897 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
recR; recombination protein RecR
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5595..6965
DNA (1371bp) protein (457aa)
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase id=1320896 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7008..7850
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B8093
thioredoxin
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_423_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7969..8526)
DNA (558bp) protein (186aa)
transcription elongation factor GreB n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D7C03
greB; transcription elongation factor GreB
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8559..8759)
DNA (201bp) protein (67aa)
hypothetical protein id=12495124 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_423_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8776..9564
DNA (789bp) protein (263aa)
heme biosynthesis protein HemY n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E015E
HesA/MoeB/ThiF family protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_423_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9586..9795)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C923E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_423_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9792..10343)
DNA (552bp) protein (184aa)
Putative uncharacterized protein id=1320890 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_423_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10354..10944)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000363AC15
peptidase S16
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_423_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10941..11558)
DNA (618bp) protein (206aa)
Phenylacrylic acid decarboxylase id=1320888 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
aromatic acid decarboxylase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11610..12140)
DNA (531bp) protein (177aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF14_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96480.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_423_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12169..12555)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036E1491
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_423_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12555..13391)
DNA (837bp) protein (279aa)
glmZ(sRNA)-inactivating NTPase n=1 Tax=Thiobacillus thioparus RepID=UPI0003628061
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_423_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13456..14406)
DNA (951bp) protein (317aa)
HPr kinase/phosphorylase (EC:2.7.1.-)
HPr kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036867E7
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_423_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14420..14875)
DNA (456bp) protein (152aa)
Possible PTS IIA-like nitrogen-regulatory protein PtsN id=1353382 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
PTS IIA-like nitrogen-regulatory protein PtsN
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14965..15300)
DNA (336bp) protein (112aa)
RNA polymerase subunit sigma-54 n=1 Tax=Thiobacillus thioparus RepID=UPI0003695264
30S ribosomal protein S30
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15455..16888)
DNA (1434bp) protein (478aa)
RNA polymerase factor sigma-54 (EC:2.7.7.6)
RNA polymerase sigma-54 factor id=1353384 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16959..17681)
DNA (723bp) protein (241aa)
ABC transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00037E1C9A
ABC transporter ATPase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17678..18220)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003683388
OstA-like family protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_423_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18217..18789)
DNA (573bp) protein (191aa)
Putative uncharacterized protein id=1353386 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18830..19372)
DNA (543bp) protein (181aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase n=1 Tax=Thiobacillus denitrificans RepID=UPI000366BE69
phosphatase kdsC
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_423_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19372..20358)
DNA (987bp) protein (329aa)
Capsule expression protein KpsF/GutQ n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLC4_THIDA
capsule expression protein KpsF/GutQ
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_423_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20450..22420
DNA (1971bp) protein (657aa)
potassium transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00036212F3
Monovalent cation:H+ antiporter-2, CPA2 family {ECO:0000313|EMBL:AAZ96492.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
antiporter-2, CPA2 family monovalent cation/proton antiporter
RTP_082018_0_1um_scaffold_423_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22463..23104)
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLC2_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96493.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_423_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23345..25087
DNA (1743bp) protein (581aa)
hypothetical protein id=12495144 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_423_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25059..25784)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000371D5CF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96495.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 84 in total

View Taxonomy