ggKbase home page

RTP_092018_0_1um_scaffold_1184

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_092018_0_1um_scaffold_1184_1
unknown

Not on your lists

comp(2..61)
DNA (60bp) protein (20aa)

This feature has no annotations

RTP_092018_0_1um_scaffold_1184_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(813..2003)
DNA (1191bp) protein (397aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0C1_9PROT
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2159..3472
DNA (1314bp) protein (438aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000371AF12
peptidase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3475..4584
DNA (1110bp) protein (370aa)
anhydro-N-acetylmuramic acid kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A220D
anmK; anhydro-N-acetylmuramic acid kinase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4644..4994)
DNA (351bp) protein (117aa)
iron--sulfur cluster insertion protein ErpA n=1 Tax=Thiobacillus thioparus RepID=UPI00036830C6
HesB-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5144..6172)
DNA (1029bp) protein (343aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI000379A797
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6287..6679)
DNA (393bp) protein (131aa)
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 id=12498490 bin=THIO_MID species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rpsI; 30S ribosomal protein S9
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6689..7129)
DNA (441bp) protein (147aa)
50S ribosomal protein L13 n=1 Tax=Thiobacillus denitrificans RepID=UPI000373A138
rplM; 50S ribosomal protein L13
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7246..8007
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000360933A
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8017..8433
DNA (417bp) protein (139aa)
OsmC/Ohr family protein id=1360777 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
OsmC/Ohr family protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1184_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8483..8680)
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLK4_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96403.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_092018_0_1um_scaffold_1184_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8677..8886)
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLK5_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96402.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_092018_0_1um_scaffold_1184_13
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9194..9391)
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CUS6_SIDLE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE12463.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
RTP_092018_0_1um_scaffold_1184_14
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9436..9660)
DNA (225bp) protein (75aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CUS5_SIDLE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE12462.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
RTP_092018_0_1um_scaffold_1184_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9752..10837)
DNA (1086bp) protein (362aa)
Outer membrane protein (Porin) n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAX3_9PROT
outer membrane protein (porin)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_16
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11081..11491)
DNA (411bp) protein (137aa)
PilT protein domain protein n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E766_GEOLS
PilT protein domain-containing protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_092018_0_1um_scaffold_1184_17
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11488..11724)
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000381819E
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_092018_0_1um_scaffold_1184_18
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11827..12129)
DNA (303bp) protein (101aa)
plasmid stabilization protein n=1 Tax=Erwinia carotovora RepID=UPI0001A44788
plasmid stabilization system
Tax=RBG_16_Gallionellales_57_15_curated
RTP_092018_0_1um_scaffold_1184_19
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12119..12355)
DNA (237bp) protein (79aa)
Predicted regulator of plasmid copy number n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NY16_AROAE
regulator of plasmid copy number
Tax=CG_Beta_01
RTP_092018_0_1um_scaffold_1184_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12518..13375
DNA (858bp) protein (286aa)
metallopeptidase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003782703
neutral zinc metallopeptidase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13511..13735
DNA (225bp) protein (75aa)
CopG family transcripitonal regulator n=1 Tax=Methylovulum miyakonense RepID=UPI00036C483E
CopG family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13863..15053)
DNA (1191bp) protein (397aa)
phospholipase D/transphosphatidylase; K06132 putative cardiolipin synthase [EC:2.7.8.-] id=12494148 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phospholipase D/transphosphatidylase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15053..15673)
DNA (621bp) protein (207aa)
endonuclease/exonuclease/phosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI000372674B
endonuclease / exonuclease / phosphatase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15811..16257)
DNA (447bp) protein (149aa)
ntpA; dATP pyrophosphohydrolase; K08310 dATP pyrophosphohydrolase [EC:3.6.1.-] id=12494150 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ntpA; dATP pyrophosphohydrolase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16235..16546)
DNA (312bp) protein (104aa)
Putative uncharacterized protein id=1360784 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16594..18387)
DNA (1794bp) protein (598aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
aspartyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI00036DA074
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18407..19012)
DNA (606bp) protein (202aa)
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003751B52
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1184_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19097..19357)
DNA (261bp) protein (87aa)
Regulatory protein, FmdB family n=1 Tax=sediment metagenome RepID=D9PMS5_9ZZZZ
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_092018_0_1um_scaffold_1184_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19495..20820)
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377DAC5
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_092018_0_1um_scaffold_1184_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20895..21566)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377DAC5
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 70 in total

View Taxonomy