ggKbase home page

RTP_092018_0_1um_scaffold_1606

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_092018_0_1um_scaffold_1606_1
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..361
DNA (360bp) protein (120aa)
transposase id=14426424 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
RTP_092018_0_1um_scaffold_1606_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(477..3488)
DNA (3012bp) protein (1004aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
pyruvate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00035E3DE3
Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase E3 component {ECO:0000313|EMBL:AAZ96605.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_092018_0_1um_scaffold_1606_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3574..4557)
DNA (984bp) protein (328aa)
pyruvate dehydrogenase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI0003720846
pyruvate dehydrogenase E1 subunit beta
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4612..5613)
DNA (1002bp) protein (334aa)
dehydrogenase complex, E1 component subunit alpha; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] id=12494005 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
dehydrogenase complex, E1 component subunit alpha
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5728..7182
DNA (1455bp) protein (485aa)
leucyl aminopeptidase (EC:3.4.11.1)
Leucyl aminopeptidase id=1326794 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7208..7864
DNA (657bp) protein (219aa)
ribosomal large subunit pseudouridine synthase A (EC:5.4.99.-); K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] id=12494001 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ribosomal large subunit pseudouridine synthase A (EC:5.4.99.-)
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1606_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7869..9230)
DNA (1362bp) protein (454aa)
Coenzyme F390 synthetase-like protein id=1326786 bin=GWE1_T_denit_62_9 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Coenzyme F390 synthetase-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9227..10975)
DNA (1749bp) protein (583aa)
Putative uncharacterized protein id=1326785 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10944..12602)
DNA (1659bp) protein (553aa)
acetolactate synthase, large subunit (EC:2.2.1.6)
acetolactate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036834F0
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12745..13440)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00031CE66B
glutathione S-transferase domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13448..14053)
DNA (606bp) protein (202aa)
Nitroreductase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NKU3_9DELT
nitroreductase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14086..15174)
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI00031BD6CA
NADH:flavin oxidoreductase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15200..16039)
DNA (840bp) protein (280aa)
S-formylglutathione hydrolase (EC:3.1.2.12)
S-formylglutathione hydrolase id=1326782 bin=GWE1_T_denit_62_9 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16047..17156)
DNA (1110bp) protein (370aa)
S-(hydroxymethyl)glutathione dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI000364247C
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17250..18329)
DNA (1080bp) protein (360aa)
transaldolase (EC:2.2.1.2)
transaldolase n=1 Tax=Thiobacillus thioparus RepID=UPI00037FC0AF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18488..19588
DNA (1101bp) protein (367aa)
chorismate synthase (EC:4.2.3.5)
chorismate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036E8789
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19612..20775)
DNA (1164bp) protein (388aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SL01_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96620.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_092018_0_1um_scaffold_1606_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20806..21507)
DNA (702bp) protein (234aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SL00_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96621.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_092018_0_1um_scaffold_1606_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21519..22814)
DNA (1296bp) protein (432aa)
glycine C-acetyltransferase (EC:2.3.1.29)
Glycine C-acetyltransferase {ECO:0000313|EMBL:AAZ96622.1}; EC=2.3.1.29 {ECO:0000313|EMBL:AAZ96622.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Glycine C-acetyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKZ9_THIDA
RTP_092018_0_1um_scaffold_1606_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23159..23977
DNA (819bp) protein (273aa)
Two Component Transcriptional Regulator, LuxR family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKZ8_THIDA
LuxR family transcriptional regulator
Two Component Transcriptional Regulator, LuxR family {ECO:0000313|EMBL:AAZ96623.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_092018_0_1um_scaffold_1606_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24343..26067
DNA (1725bp) protein (575aa)
Putative Adenylate/Guanylate Cyclase id=1326777 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
adenylate/guanylate cyclase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_22
unknown

Not on your lists

comp(26088..26798)
DNA (711bp) protein (237aa)

This feature has no annotations

RTP_092018_0_1um_scaffold_1606_23
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26822..27361)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7H3I3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AKC80314.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
hypothetical protein
RTP_092018_0_1um_scaffold_1606_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27649..27954)
DNA (306bp) protein (102aa)
Putative addiction module antidote protein id=1326775 bin=GWE1_T_denit_62_9 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1606_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27983..28279)
DNA (297bp) protein (99aa)
hypothetical protein id=1326773 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1606_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28334..29494)
DNA (1161bp) protein (387aa)
Major facilitator superfamily protein id=1326772 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
major facilitator superfamily protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1606_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29741..32182
DNA (2442bp) protein (814aa)
Putative ATP-dependent protease LA, putative id=1326770 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ATP-dependent protease LA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32242..32718
DNA (477bp) protein (159aa)
YbaK-like protein id=1326769 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
prolyl-tRNA synthetase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32917..33390
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A8977
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1606_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33540..33746
DNA (207bp) protein (69aa)
Possible Cold-shock DNA-binding domain protein id=1326767 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cold-shock DNA-binding protein family protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 34 in total

View Taxonomy