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RTP_09252017_14_scaffold_878

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_09252017_14_scaffold_878_1

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1..174
DNA (174bp) protein (58aa)
Single-strand DNA-binding n=1 Tax=sediment metagenome RepID=D9PMS3_9ZZZZ
Single-strand DNA-binding {ECO:0000313|EMBL:EFK95146.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
Single-stranded DNA-binding protein
RTP_09252017_14_scaffold_878_2

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237..2231
DNA (1995bp) protein (665aa)
TonB-dependent receptor, plug n=1 Tax=sediment metagenome RepID=D9PMS4_9ZZZZ
TonB-dependent receptor, plug {ECO:0000313|EMBL:EFK95147.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
hypothetical protein
RTP_09252017_14_scaffold_878_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2334..4406
DNA (2073bp) protein (691aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377DAC5
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_09252017_14_scaffold_878_4

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4511..4768
DNA (258bp) protein (86aa)
Regulatory protein, FmdB family n=1 Tax=sediment metagenome RepID=D9PMS5_9ZZZZ
Regulatory protein, FmdB family {ECO:0000313|EMBL:EFK95148.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
hypothetical protein
RTP_09252017_14_scaffold_878_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4856..5458
DNA (603bp) protein (201aa)
Probable transmembrane protein id=1360787 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transmembrane protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_09252017_14_scaffold_878_6

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5471..7264
DNA (1794bp) protein (598aa)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EFK95333.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EFK95333.1};; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartyl-tRNA synthetase n=1 Tax=sediment metagenome RepID=D9PM81_9ZZZZ
RTP_09252017_14_scaffold_878_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7417..7722
DNA (306bp) protein (102aa)
Putative uncharacterized protein id=1360784 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_09252017_14_scaffold_878_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7719..8159
DNA (441bp) protein (147aa)
dihydroneopterin triphosphate pyrophosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI000379BEE4
ntpA; dATP pyrophosphohydrolase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_09252017_14_scaffold_878_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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8167..8919
DNA (753bp) protein (251aa)
endonuclease/exonuclease/phosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI000372674B
endonuclease / exonuclease / phosphatase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_09252017_14_scaffold_878_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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8919..10112
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000374C430
phospholipase D/transphosphatidylase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_09252017_14_scaffold_878_11
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

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10261..10512
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NW18_9GAMM
hypothetical protein
Tax=RBG_16_Chloroflexi_52_11_curated
RTP_09252017_14_scaffold_878_12
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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10515..11846
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8I573_9GAMM
hipA; HipA protein
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
RTP_09252017_14_scaffold_878_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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12092..13162
DNA (1071bp) protein (357aa)
outer membrane protein (porin) id=12494216 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
outer membrane protein (porin)
Outer membrane protein (Porin) {ECO:0000313|EMBL:AAZ96401.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_09252017_14_scaffold_878_14
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13393..14256)
DNA (864bp) protein (288aa)
Integrase catalytic region n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLX0_SIDLE
Integrase catalytic region
Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
RTP_09252017_14_scaffold_878_15
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14253..14603)
DNA (351bp) protein (117aa)
Transposase IS3/IS911 family protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLW9_SIDLE
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ADE12564.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
RTP_09252017_14_scaffold_878_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15011..15856
DNA (846bp) protein (282aa)
hypothetical protein id=12497976 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97919.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_09252017_14_scaffold_878_17
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

16090..16296
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000375531F
DNA-binding domain-containing protein
DNA-binding domain-containing protein {ECO:0000313|EMBL:AGK03609.1}; TaxID=504728 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21); (Thermus ruber).;"
RTP_09252017_14_scaffold_878_18
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

16286..16555
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000360FF52
Strain A contig00033, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ54643.1}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber.;"
hypothetical protein
RTP_09252017_14_scaffold_878_19
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17003..17233
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Chlorobium chlorochromatii (strain CaD3) RepID=Q3AR03_CHLCH
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
RTP_09252017_14_scaffold_878_20
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17230..17583
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5NEK7_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX88589.1}; TaxID=946483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Candidatus Symbiobacter mobilis CR.;"
RTP_09252017_14_scaffold_878_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17623..18039)
DNA (417bp) protein (139aa)
OsmC/Ohr family protein id=1360777 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
OsmC/Ohr family protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_09252017_14_scaffold_878_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18049..18810)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000360933A
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_09252017_14_scaffold_878_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19002..19448
DNA (447bp) protein (149aa)
50S ribosomal protein L13 id=1351103 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rplM; 50S ribosomal protein L13
Tax=GWE1_Thiobacillus_62_9_curated
RTP_09252017_14_scaffold_878_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19445..19837
DNA (393bp) protein (131aa)
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 id=12498490 bin=THIO_MID species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rpsI; 30S ribosomal protein S9
Tax=GWE1_Thiobacillus_62_9_curated
RTP_09252017_14_scaffold_878_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19941..20033
DNA (93bp) protein (31aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] id=12494225 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 25 items

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