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RTP_09252017_14_scaffold_1643

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_09252017_14_scaffold_1643_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..95)
DNA (93bp) protein (31aa)
Tyrosine recombinase XerD n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGB9_THIDA
tyrosine recombinase XerD
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_09252017_14_scaffold_1643_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110..625)
DNA (516bp) protein (172aa)
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B6E16
methylated-DNA-(protein)-cysteine S-methyltransferase
Methylated-DNA-(Protein)-cysteine S-methyltransferase {ECO:0000313|EMBL:AAZ98330.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_09252017_14_scaffold_1643_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(700..1083)
DNA (384bp) protein (128aa)
50S ribosomal protein L19 n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DBAE1
rplS; 50S ribosomal protein L19
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_09252017_14_scaffold_1643_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1215..1922)
DNA (708bp) protein (236aa)
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31)
tRNA (guanine-N1)-methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037FB5C0
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_09252017_14_scaffold_1643_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1934..2413)
DNA (480bp) protein (160aa)
Ribosome maturation factor RimM id=1368683 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
16S rRNA-processing protein RimM
Tax=GWE1_Thiobacillus_62_9_curated
RTP_09252017_14_scaffold_1643_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2437..2694)
DNA (258bp) protein (86aa)
30S ribosomal protein S16 id=1368682 bin=GWE1_T_denit_62_9 species=Laribacter hongkongensis genus=Laribacter taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
30S ribosomal protein S16
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_09252017_14_scaffold_1643_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2769..4112)
DNA (1344bp) protein (448aa)
signal recognition particle protein Srp54 n=1 Tax=Thiobacillus thioparus RepID=UPI00036FA614
signal recognition particle subunit FFH/SRP54 (srp54)
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_09252017_14_scaffold_1643_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4335..4817
DNA (483bp) protein (161aa)
Transmembrane protein id=1368680 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transmembrane protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_09252017_14_scaffold_1643_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4829..6127
DNA (1299bp) protein (433aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D991B
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_09252017_14_scaffold_1643_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6219..7937
DNA (1719bp) protein (573aa)
type II secretory protein GspE n=1 Tax=Thiobacillus thioparus RepID=UPI00036CA70B
type IV pilus assembly protein, PilB
Type IV pilus assembly protein, PilB {ECO:0000313|EMBL:AAZ98323.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_09252017_14_scaffold_1643_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7949..9172
DNA (1224bp) protein (408aa)
Type IV pilus assembly protein PilC id=1368676 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
type IV pilus assembly protein PilC
Tax=GWE1_Thiobacillus_62_9_curated
RTP_09252017_14_scaffold_1643_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9169..10023
DNA (855bp) protein (285aa)
type 4 prepilin peptidase 1 (EC:3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme id=1368675 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_09252017_14_scaffold_1643_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10023..10631
DNA (609bp) protein (203aa)
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase id=1368674 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_09252017_14_scaffold_1643_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10684..11439
DNA (756bp) protein (252aa)
Cell division protein ZapD id=1368673 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_09252017_14_scaffold_1643_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11640..12296)
DNA (657bp) protein (219aa)
cbbI; ribose-5-phosphate isomerase A (EC:5.3.1.6)
ribose 5-phosphate isomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CC557
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_09252017_14_scaffold_1643_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12377..13894
DNA (1518bp) protein (506aa)
L-threonine ammonia-lyase (EC:4.3.1.19)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
L-threonine dehydratase biosynthetic IlvA n=1 Tax=Thiobacillus thioparus RepID=UPI00037B9CF0
RTP_09252017_14_scaffold_1643_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14031..14189
DNA (159bp) protein (53aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367B89B
SLT domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 17 items

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