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RTP_09252017_14_Hydrogenophilales_65_8

In projects: RTP_09252017_14  |  SOB_across_mines

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Betaproteobacteria

Displaying items 51-100 of 710 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_09252017_14_scaffold_65615
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1113 bp 66.49 3.50 93.80
RTP_09252017_14_scaffold_14155
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
6 2650 bp 63.62 3.51 82.30
RTP_09252017_14_scaffold_58532
Order: Hydrogenophilales (100%)
3 1195 bp 68.45 3.51 100.42
RTP_09252017_14_scaffold_52417
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1279 bp 67.71 3.52 86.32
RTP_09252017_14_scaffold_15119
Order: Hydrogenophilales (66.67%)
3 2559 bp 64.63 3.52 92.38
RTP_09252017_14_scaffold_49800
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1320 bp 65.83 3.52 91.36
RTP_09252017_14_scaffold_52656
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1276 bp 58.78 3.53 73.59
RTP_09252017_14_scaffold_55796
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 1231 bp 64.99 3.53 97.48
RTP_09252017_14_scaffold_66735
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1101 bp 65.67 3.54 95.91
RTP_09252017_14_scaffold_59077
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1188 bp 65.91 3.54 98.99
RTP_09252017_14_scaffold_53131
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1269 bp 61.78 3.55 51.54
RTP_09252017_14_scaffold_71654
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1052 bp 55.51 3.56 99.81
RTP_09252017_14_scaffold_54340
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1252 bp 64.46 3.59 99.20
RTP_09252017_14_scaffold_38203
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1544 bp 66.26 3.59 94.62
RTP_09252017_14_scaffold_40606
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1491 bp 66.53 3.62 100.00
RTP_09252017_14_scaffold_73749
Order: Hydrogenophilales (75%)
4 1032 bp 68.22 3.63 88.37
RTP_09252017_14_scaffold_61961
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1154 bp 67.94 3.64 87.35
RTP_09252017_14_scaffold_42933
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1444 bp 58.31 3.64 99.10
RTP_09252017_14_scaffold_34303
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1644 bp 65.21 3.65 85.40
RTP_09252017_14_scaffold_28885
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1807 bp 59.93 3.65 97.62
RTP_09252017_14_scaffold_8278
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 3479 bp 58.32 3.66 93.56
RTP_09252017_14_scaffold_34704
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1632 bp 65.44 3.68 87.13
RTP_09252017_14_scaffold_41738
Order: Hydrogenophilales (66.67%)
3 1467 bp 57.87 3.68 65.64
RTP_09252017_14_scaffold_71279
Order: Hydrogenophilales (66.67%)
3 1055 bp 59.53 3.70 79.62
RTP_09252017_14_scaffold_63511
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1136 bp 66.90 3.70 100.35
RTP_09252017_14_scaffold_27556
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1855 bp 56.50 3.72 77.79
RTP_09252017_14_scaffold_49259
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1330 bp 67.67 3.72 91.80
RTP_09252017_14_scaffold_42477
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1453 bp 64.42 3.72 73.71
RTP_09252017_14_scaffold_67835
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1090 bp 67.80 3.72 99.63
RTP_09252017_14_scaffold_64387
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1127 bp 65.48 3.73 100.09
RTP_09252017_14_scaffold_49371
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1328 bp 62.20 3.73 79.29
RTP_09252017_14_scaffold_38941
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1526 bp 61.07 3.74 63.50
RTP_09252017_14_scaffold_45436
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1396 bp 59.46 3.76 73.50
RTP_09252017_14_scaffold_52532
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1278 bp 65.57 3.76 100.00
RTP_09252017_14_scaffold_36177
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1594 bp 66.75 3.76 95.61
RTP_09252017_14_scaffold_61528
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1158 bp 64.34 3.76 86.27
RTP_09252017_14_scaffold_43534
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1433 bp 60.92 3.77 85.21
RTP_09252017_14_scaffold_39545
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1513 bp 68.94 3.77 100.93
RTP_09252017_14_scaffold_58862
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1191 bp 70.61 3.78 75.31
RTP_09252017_14_scaffold_29471
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1787 bp 67.15 3.78 79.57
RTP_09252017_14_scaffold_26561
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1895 bp 63.43 3.80 94.99
RTP_09252017_14_scaffold_21393
Order: Hydrogenophilales (100%)
3 2133 bp 66.34 3.80 100.28
RTP_09252017_14_scaffold_28723
Order: Hydrogenophilales (66.67%)
3 1813 bp 66.08 3.81 83.89
RTP_09252017_14_scaffold_53725
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1261 bp 64.16 3.81 64.95
RTP_09252017_14_scaffold_34342
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1643 bp 65.79 3.83 99.88
RTP_09252017_14_scaffold_18420
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 2309 bp 63.62 3.83 99.91
RTP_09252017_14_scaffold_49264
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1329 bp 62.38 3.84 76.07
RTP_09252017_14_scaffold_43291
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1438 bp 68.08 3.86 29.00
RTP_09252017_14_scaffold_39608
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1512 bp 68.06 3.87 92.86
RTP_09252017_14_scaffold_64636
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1124 bp 70.64 3.87 95.55
Displaying items 51-100 of 710 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.