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RTP_09252017_14_Hydrogenophilales_65_8

In projects: RTP_09252017_14  |  SOB_across_mines

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Betaproteobacteria

Displaying items 101-150 of 710 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_09252017_14_scaffold_29579
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1784 bp 65.41 3.87 100.22
RTP_09252017_14_scaffold_76597
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1007 bp 68.22 3.87 91.76
RTP_09252017_14_scaffold_39556
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1513 bp 61.53 3.87 99.34
RTP_09252017_14_scaffold_64814
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1122 bp 65.33 3.88 84.49
RTP_09252017_14_scaffold_16333
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 3704 bp 64.07 3.89 83.99
RTP_09252017_14_scaffold_55577
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1235 bp 66.32 3.89 95.71
RTP_09252017_14_scaffold_42073
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1460 bp 67.53 3.90 98.84
RTP_09252017_14_scaffold_25984
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1917 bp 60.51 3.91 49.30
RTP_09252017_14_scaffold_56145
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1227 bp 66.10 3.91 96.09
RTP_09252017_14_scaffold_50896
Order: Hydrogenophilales (66.67%)
3 1303 bp 68.38 3.91 99.23
RTP_09252017_14_scaffold_53755
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1260 bp 66.19 3.93 94.52
RTP_09252017_14_scaffold_21274
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 2139 bp 68.91 3.93 100.28
RTP_09252017_14_scaffold_21358
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 2135 bp 66.37 3.93 101.17
RTP_09252017_14_scaffold_66437
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1104 bp 67.84 3.94 96.20
RTP_09252017_14_scaffold_30727
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1746 bp 65.01 3.95 93.47
RTP_09252017_14_scaffold_57112
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1214 bp 67.63 3.95 101.57
RTP_09252017_14_scaffold_54243
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1254 bp 59.25 3.95 89.71
RTP_09252017_14_scaffold_63669
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1135 bp 64.14 3.96 89.87
RTP_09252017_14_scaffold_70673
Order: Hydrogenophilales (100%)
3 1061 bp 62.77 3.96 79.17
RTP_09252017_14_scaffold_70692
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1061 bp 55.89 3.96 76.63
RTP_09252017_14_scaffold_51871
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1287 bp 68.84 3.96 92.54
RTP_09252017_14_scaffold_31052
Order: Hydrogenophilales (100%)
3 1737 bp 69.31 3.97 81.69
RTP_09252017_14_scaffold_67117
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1097 bp 62.63 3.97 87.78
RTP_09252017_14_scaffold_75360
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1018 bp 67.68 3.98 87.52
RTP_09252017_14_scaffold_38061
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1547 bp 64.19 3.98 100.26
RTP_09252017_14_scaffold_67830
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1090 bp 64.68 3.99 75.41
RTP_09252017_14_scaffold_27167
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 1871 bp 62.48 4.01 77.77
RTP_09252017_14_scaffold_29595
Order: Hydrogenophilales (50%)
4 1784 bp 64.18 4.04 83.24
RTP_09252017_14_scaffold_73053
Order: Hydrogenophilales (66.67%)
3 1038 bp 62.24 4.05 91.33
RTP_09252017_14_scaffold_65854
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1111 bp 65.98 4.05 100.45
RTP_09252017_14_scaffold_44967
Order: Hydrogenophilales (66.67%)
3 1405 bp 66.33 4.06 82.63
RTP_09252017_14_scaffold_59900
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1178 bp 64.52 4.07 99.83
RTP_09252017_14_scaffold_62938
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1143 bp 69.82 4.07 100.00
RTP_09252017_14_scaffold_49520
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1325 bp 62.11 4.08 102.79
RTP_09252017_14_scaffold_36697
Species: GWE1_Thiobacillus_62_9_curated (75%)
4 1581 bp 63.76 4.08 89.75
RTP_09252017_14_scaffold_54504
Order: Hydrogenophilales (100%)
3 1250 bp 66.00 4.08 99.84
RTP_09252017_14_scaffold_60501
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1171 bp 64.13 4.10 73.53
RTP_09252017_14_scaffold_32961
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1680 bp 69.23 4.11 97.68
RTP_09252017_14_scaffold_38676
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1532 bp 67.49 4.11 96.93
RTP_09252017_14_scaffold_25492
Order: Hydrogenophilales (66.67%)
3 1936 bp 64.98 4.11 99.79
RTP_09252017_14_scaffold_33052
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1677 bp 67.26 4.11 98.93
RTP_09252017_14_scaffold_75223
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1019 bp 62.51 4.12 54.47
RTP_09252017_14_scaffold_67536
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1093 bp 64.78 4.12 99.91
RTP_09252017_14_scaffold_42741
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1448 bp 64.85 4.14 99.65
RTP_09252017_14_scaffold_27102
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1874 bp 61.15 4.16 61.31
RTP_09252017_14_scaffold_62038
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1153 bp 64.70 4.16 97.57
RTP_09252017_14_scaffold_72264
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1046 bp 62.91 4.16 99.81
RTP_09252017_14_scaffold_39562
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1513 bp 66.03 4.16 87.64
RTP_09252017_14_scaffold_76610
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1007 bp 65.74 4.17 64.35
RTP_09252017_14_scaffold_56584
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1221 bp 65.93 4.18 84.52
Displaying items 101-150 of 710 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.