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RTP_11222018_0_1um_scaffold_2032

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_2032_1

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3..767
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QT37_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10409.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
integral membrane protein MviN
RTP_11222018_0_1um_scaffold_2032_2
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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814..1755
DNA (942bp) protein (314aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Riboflavin biosynthesis protein RibF n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AI89_9PROT
riboflavin biosynthesis protein RibF
RTP_11222018_0_1um_scaffold_2032_3
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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1748..4528
DNA (2781bp) protein (927aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAI9_9PROT
RTP_11222018_0_1um_scaffold_2032_4
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4521..4982
DNA (462bp) protein (154aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540).;"
Lipoprotein signal peptidase n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WU44_METML
lspA; lipoprotein signal peptidase
RTP_11222018_0_1um_scaffold_2032_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4979..5419
DNA (441bp) protein (147aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHS1_THIDA
FKBP-type peptidyl-prolyl cis-trans isomerase 2
RTP_11222018_0_1um_scaffold_2032_6
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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5416..6345
DNA (930bp) protein (310aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B5Y4_9PROT
RTP_11222018_0_1um_scaffold_2032_7
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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6423..6854
DNA (432bp) protein (144aa)
Phosphate-starvation-inducible E n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ACT5_9PROT
Phosphate-starvation-inducible E {ECO:0000313|EMBL:GAO37685.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
phosphate-starvation-inducible E
RTP_11222018_0_1um_scaffold_2032_8
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6883..7992)
DNA (1110bp) protein (370aa)
Heat shock protein DnaJ domain-containing protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GFX5_NITSI
molecular chaperone DnaJ
Tax=RBG_16_Gammaproteobacteria_57_12_curated
RTP_11222018_0_1um_scaffold_2032_trna_1
unknown

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comp(8178..8250)
DNA (73bp)
transferRNA Thr
RTP_11222018_0_1um_scaffold_2032_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8335..8733)
DNA (399bp) protein (133aa)
ClpXP protease specificity-enhancing factor; K03600 stringent starvation protein B id=12497861 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ClpXP protease specificity-enhancing factor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
RTP_11222018_0_1um_scaffold_2032_10
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8733..9329)
DNA (597bp) protein (199aa)
Glutathione S-transferase-like protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AF27_9PROT
glutathione S-transferase-like protein
Glutathione S-transferase-like protein {ECO:0000313|EMBL:BAN34451.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_2032_11
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9406..10008)
DNA (603bp) protein (201aa)
Ubiquinol-cytochrome c reductase cytochrome c1 subunit n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9P1_9PROT
Cytochrome C {ECO:0000313|EMBL:GAO35855.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
ubiquinol-cytochrome c reductase cytochrome c1 subunit
Displaying 12 items

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