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RTP_11222018_0_1um_scaffold_2040

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_2040_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1..84
DNA (84bp) protein (28aa)
Probable phosphoketolase id=1342793 bin=GWE1_T_denit_62_9 species=Thauera phenylacetica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
phosphoketolase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_2040_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84..857
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A2F1B
acetate kinase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_2040_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

833..1114
DNA (282bp) protein (94aa)
Acetate kinase id=1342792 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
acetate and butyrate kinase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_2040_4

Not on your lists

comp(1211..2101)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QSM2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10244.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
RTP_11222018_0_1um_scaffold_2040_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2173..3810)
DNA (1638bp) protein (546aa)
merA; mercuric reductase (EC:1.16.1.1)
Mercuric reductase MerA id=1311321 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
RTP_11222018_0_1um_scaffold_2040_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3807..4109)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003754B4D
mercuric transport protein periplasmic protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_2040_7
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4118..4468)
DNA (351bp) protein (117aa)
Mercuric transport protein MerT n=2 Tax=Delftia acidovorans RepID=A9BR73_DELAS
putative mercuric transport protein
Mercuric transporter {ECO:0000313|EMBL:EPD44963.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
RTP_11222018_0_1um_scaffold_2040_8
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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4552..4728
DNA (177bp) protein (59aa)
Transcriptional regulator MerR family n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GSR5_CUPNN
MerR family transcriptional regulator
Tax=RBG_16_Gamma2_64_11_curated
RTP_11222018_0_1um_scaffold_2040_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4932..5549)
DNA (618bp) protein (206aa)
Two Component Transcriptional Regulator, LuxR family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF76_THIDA
LuxR family transcriptional regulator
Two Component Transcriptional Regulator, LuxR family {ECO:0000313|EMBL:AAZ98739.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_2040_10
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5570..6358)
DNA (789bp) protein (263aa)
Short chain dehydrogenase family protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K2E5_AZOSB
short chain dehydrogenase
Tax=GWA2_Rhodocyclales_65_20_curated
RTP_11222018_0_1um_scaffold_2040_11

Not on your lists

comp(6404..7060)
DNA (657bp) protein (219aa)
Thiol:disulfide interchange protein dsbA n=1 Tax=mine drainage metagenome RepID=E6QSR0_9ZZZZ
Thiol:disulfide interchange protein dsbA {ECO:0000313|EMBL:CBI10282.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
thiol:disulfide interchange protein DsbA
RTP_11222018_0_1um_scaffold_2040_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7080..7694)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DD89D
sporulation domain-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_2040_13

Not on your lists


comp(7707..9449)
DNA (1743bp) protein (581aa)
Arginyl-tRNA synthetase {ECO:0000313|EMBL:CBI10284.1}; EC=6.1.1.19 {ECO:0000313|EMBL:CBI10284.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginyl-tRNA synthetase n=1 Tax=mine drainage metagenome RepID=E6QSR2_9ZZZZ
RTP_11222018_0_1um_scaffold_2040_14
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9512..9892
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Thiocapsa marina 5811 RepID=F9UHY9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AKH20553.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
RTP_11222018_0_1um_scaffold_2040_15
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9889..10224
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00036938BC
UPF0102 protein OYT1_02238 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_2040_16
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10279..10869
DNA (591bp) protein (197aa)
Phosphoheptose isomerase {ECO:0000255|HAMAP-Rule:MF_00067}; EC=5.3.1.28 {ECO:0000255|HAMAP-Rule:MF_00067};; Sedoheptulose 7-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00067}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Phosphoheptose isomerase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=GMHA_AROAE
gmhA; phosphoheptose isomerase
RTP_11222018_0_1um_scaffold_2040_17
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10869..11456
DNA (588bp) protein (196aa)
Putative periplasmic or secreted lipoprotein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAW6_9PROT
putative periplasmic or secreted lipoprotein
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:BAN36310.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_2040_18
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11449..11943
DNA (495bp) protein (165aa)
aut protein n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI0003807563
rfaE bifunctional protein
Tax=CG_Beta_01
RTP_11222018_0_1um_scaffold_2040_19
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11940..12722
DNA (783bp) protein (261aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase {ECO:0000256|HAMAP-Rule:MF_01636, ECO:0000256|SAAS:SAAS00011098}; EC=4.1.1.- {ECO:0000256|HAMAP-Rule:MF_01636, ECO:0000256|SAAS:SAAS00011102};; Polyprenyl p-hydroxybenzoate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01636}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIJ8_9PROT
3-octaprenyl-4-hydroxybenzoate carboxy-lyase
Displaying 19 items

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