ggKbase home page

RTP_11222018_0_1um_scaffold_2846

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_2846_1
unknown

Not on your lists

3..227
DNA (225bp) protein (75aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_2846_2
unknown

Not on your lists

230..670
DNA (441bp) protein (147aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_2846_3
unknown

Not on your lists

667..1137
DNA (471bp) protein (157aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_2846_4
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1388..1693
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9W5I4_METEP
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
RTP_11222018_0_1um_scaffold_2846_5
unknown

Not on your lists

1856..2050
DNA (195bp) protein (65aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_2846_6
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

2114..2914
DNA (801bp) protein (267aa)
D12 class N6 adenine-specific DNA methyltransferase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BPR4_9GAMM
Site-specific DNA methylase {ECO:0000313|EMBL:KJR41533.1}; TaxID=1609970 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" source="Candidatus Magnetoovum chiemensis.;"
D12 class N6 adenine-specific DNA methyltransferase
RTP_11222018_0_1um_scaffold_2846_7
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3191..3706)
DNA (516bp) protein (172aa)
DoxX family protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DI72_METS0
DoxX family protein
DoxX family protein {ECO:0000313|EMBL:ADI29757.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_11222018_0_1um_scaffold_2846_8
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3790..4545)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DM55_METS0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI30749.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_11222018_0_1um_scaffold_2846_9
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4542..5426)
DNA (885bp) protein (295aa)
UPF0276 protein MPQ_1794 n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QJ38_METS6
hypothetical protein
Tax=BJP_S1_SUB10_Methylophilales_55_32
RTP_11222018_0_1um_scaffold_2846_10
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5463..5765)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DM53_METS0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI30747.1}; Flags: Precursor;; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_11222018_0_1um_scaffold_2846_11
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5842..6090)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6X6P5_METSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT51038.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
RTP_11222018_0_1um_scaffold_2846_12
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6106..6672)
DNA (567bp) protein (189aa)
RNA polymerase sigma factor n=2 Tax=Methylovorus RepID=C6X6P6_METSD
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
RTP_11222018_0_1um_scaffold_2846_13
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6717..7289)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J2L117_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL86000.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
SNARE associated Golgi protein
RTP_11222018_0_1um_scaffold_2846_14
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7376..8776)
DNA (1401bp) protein (467aa)
copA; putative oxidase copper oxidase (EC:1.10.3.3)
Putative oxidase, putative copper oxidase {ECO:0000313|EMBL:AEK62791.1}; EC=1.10.3.3 {ECO:0000313|EMBL:AEK62791.1};; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
Putative oxidase, putative copper oxidase n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0ACJ6_COLFT
RTP_11222018_0_1um_scaffold_2846_15
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8770..9552)
DNA (783bp) protein (261aa)
Outer membrane protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QNU8_AZOSU
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AEV26992.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Displaying 15 items

View Taxonomy