ggKbase home page

RTP_11222018_0_1um_scaffold_209

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_209_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..413
DNA (411bp) protein (137aa)
lipoyl synthase n=1 Tax=Thiobacillus thioparus RepID=UPI0003619D89
lipoyl synthase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_209_2

Not on your lists

comp(517..1371)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QNR7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI08888.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_209_3
Alishewanella aestuarii, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2388..3689
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Alishewanella aestuarii B11 RepID=J2IDN8_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:EJI85277.1}; TaxID=1197174 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella aestuarii B11.;"
site-specific DNA-methyltransferase
RTP_11222018_0_1um_scaffold_209_4
Idiomarina loihiensis, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3764..5998
DNA (2235bp) protein (745aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=283942 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.;" source="Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR).;"
Predicted signaling protein with an ATPase domain n=2 Tax=Idiomarina loihiensis RepID=Q5QZH0_IDILO
signaling protein
RTP_11222018_0_1um_scaffold_209_5
Idiomarina loihiensis, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5998..7107
DNA (1110bp) protein (370aa)
Uncharacterized protein n=2 Tax=Idiomarina loihiensis RepID=Q5QZH1_IDILO
Uncharacterized protein {ECO:0000313|EMBL:AAV83438.1}; TaxID=283942 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.;" source="Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR).;"
hypothetical protein
RTP_11222018_0_1um_scaffold_209_6
unknown

Not on your lists

7110..7835
DNA (726bp) protein (242aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_209_7
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7996..9864
DNA (1869bp) protein (623aa)
Chaperone protein HtpG n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJS5_9PROT
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
heat shock protein 90
RTP_11222018_0_1um_scaffold_209_8
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9971..10363)
DNA (393bp) protein (131aa)
4-carboxymuconolactone decarboxylase (EC:4.1.1.44)
Carboxymuconolactone decarboxylase n=2 Tax=Acidithiobacillus caldus RepID=F9ZMD7_ACICS
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:AEK57286.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
RTP_11222018_0_1um_scaffold_209_9
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10411..11292)
DNA (882bp) protein (294aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CR21_SIDLE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE11407.1}; Flags: Precursor;; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
RTP_11222018_0_1um_scaffold_209_10
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11391..12287
DNA (897bp) protein (299aa)
Glycine cleavage system transcriptional activator n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F8J7_9PROT
DNA-binding transcriptional activator GcvA {ECO:0000313|EMBL:KFZ89123.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
gcvA; Glycine cleavage system transcriptional activator
RTP_11222018_0_1um_scaffold_209_11
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(12338..13285)
DNA (948bp) protein (316aa)
Putative uncharacterized protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SE23_GALCS
hypothetical protein
Tax=RBG_16_Zixibacteria_53_22_curated
RTP_11222018_0_1um_scaffold_209_12
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13285..14043)
DNA (759bp) protein (253aa)
UbiA prenyltransferase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SE24_GALCS
UbiA prenyltransferase
Tax=GWA2_Gallionellales_54_124_curated
RTP_11222018_0_1um_scaffold_209_13
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14144..14449)
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47FS2_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ46309.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
RTP_11222018_0_1um_scaffold_209_14
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14515..15963)
DNA (1449bp) protein (483aa)
Protein-export membrane protein SecF n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIB2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO35257.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
protein-export membrane protein SecF
RTP_11222018_0_1um_scaffold_209_15
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15973..16821)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9K1_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN34250.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_209_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17150..17806
DNA (657bp) protein (219aa)
sulfurtransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036EFCC5
rhodanese-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_209_17
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17836..18450)
DNA (615bp) protein (205aa)
HAD-superfamily subfamily IB hydrolase, TIGR01490 n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C548_NITHN
HAD-superfamily hydrolase
HAD-superfamily subfamily IB hydrolase, TIGR01490 {ECO:0000313|EMBL:ADE15271.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
RTP_11222018_0_1um_scaffold_209_18
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(18447..19187)
DNA (741bp) protein (247aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SE26_GALCS
short-chain dehydrogenase/reductase SDR
Tax=RBG_16_Zixibacteria_53_22_curated
RTP_11222018_0_1um_scaffold_209_19
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(19180..20523)
DNA (1344bp) protein (448aa)
FAD linked oxidase domain protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SE27_GALCS
FAD linked oxidase domain-containing protein
Tax=RBG_16_Zixibacteria_53_22_curated
RTP_11222018_0_1um_scaffold_209_20
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20531..22030)
DNA (1500bp) protein (500aa)
Glycosyl transferase family protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SE28_GALCS
glycosyl transferase family protein
Tax=GWA2_Gallionellales_54_124_curated
RTP_11222018_0_1um_scaffold_209_21
Bartonella tamiae, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22123..23187
DNA (1065bp) protein (355aa)
DNA (Cytosine-5-)-methyltransferase n=1 Tax=Bartonella tamiae Th239 RepID=J0QZQ6_9RHIZ
DNA (Cytosine-5-)-methyltransferase {ECO:0000313|EMBL:EJF91651.1}; TaxID=1094558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella tamiae Th239.;"
DNA-cytosine methyltransferase
RTP_11222018_0_1um_scaffold_209_22
Bartonella tamiae, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23191..24084
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Bartonella tamiae Th239 RepID=J1K3E6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJF91650.1}; TaxID=1094558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella tamiae Th239.;"
restriction endonuclease HaeIII
RTP_11222018_0_1um_scaffold_209_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24156..24614
DNA (459bp) protein (153aa)
preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB id=12493224 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Protein-export protein secB
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_209_24
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24619..25047
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DN19_METS0
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
RTP_11222018_0_1um_scaffold_209_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25044..26033
DNA (990bp) protein (330aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] id=1328422 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_209_26
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26099..26797
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QL04_AZOSU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV26661.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
RTP_11222018_0_1um_scaffold_209_27
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26880..28271)
DNA (1392bp) protein (464aa)
ATP-dependent RNA helicase DbpA n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0A8S6_COLFT
dbpA; ATP-dependent 23S rRNA helicase DbpA
ATP-dependent 23S rRNA helicase DbpA {ECO:0000313|EMBL:AIY41825.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
RTP_11222018_0_1um_scaffold_209_28
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28434..28772
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DPA9_METS0
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_209_29
Burkholderia pyrrocinia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28833..29159
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL51929.1}; TaxID=60550 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia pyrrocinia (Pseudomonas pyrrocinia).;"
RTP_11222018_0_1um_scaffold_209_30
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29161..29955)
DNA (795bp) protein (265aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U2ZJ90_PSEAC
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAD61565.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
nitrate ABC transporter ATPases C and D
Displaying items 1-30 of 57 in total

View Taxonomy