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RTP_11222018_0_1um_scaffold_340

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_340_1

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3..206
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QU34_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10756.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transcriptional regulator
RTP_11222018_0_1um_scaffold_340_2

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295..705
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7SE58_9HELI
hypothetical protein
DNA-binding protein {ECO:0000313|EMBL:EQD27079.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_11222018_0_1um_scaffold_340_3

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702..1172
DNA (471bp) protein (157aa)
Putative Death-on-curing family protein n=1 Tax=mine drainage metagenome RepID=E6QU35_9ZZZZ
Putative Death-on-curing family protein {ECO:0000313|EMBL:CBI10757.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
virulence-related protein
RTP_11222018_0_1um_scaffold_340_4
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1166..2215
DNA (1050bp) protein (350aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1535422 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassotalea.;" source="Thalassotalea sp. ND16A.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Glaciecola chathamensis S18K6 RepID=K6XD40_9ALTE
CRISPR-associated Cas1 family protein
RTP_11222018_0_1um_scaffold_340_5
Pseudoalteromonas luteoviolacea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2212..5148
DNA (2937bp) protein (979aa)
CRISPR-associated endonuclease Cas3-HD n=1 Tax=Pseudoalteromonas luteoviolacea 2ta16 RepID=V4HRL4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KID56004.1}; TaxID=43657 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas luteoviolacea.;"
CRISPR-associated endonuclease Cas3-HD
RTP_11222018_0_1um_scaffold_340_6
Vibrio cholerae, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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5152..6099
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Vibrio cholerae HE48 RepID=F9B110_VIBCL
Putative uncharacterized protein {ECO:0000313|EMBL:EFH73386.1}; TaxID=345074 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio cholerae RC385.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_340_7
Vibrio metschnikovii, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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6109..7119
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Oligella ureolytica RepID=UPI00036577F1
Putative uncharacterized protein {ECO:0000313|EMBL:EEX37077.1}; TaxID=675813 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio metschnikovii CIP 69.14.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_340_8
Pseudoalteromonas luteoviolacea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7129..7680
DNA (552bp) protein (184aa)
CRISPR-associated protein Cas6/Csy4, subtype I-F/YPEST n=1 Tax=Pseudoalteromonas luteoviolacea 2ta16 RepID=V4HNL8_9GAMM
CRISPR-associated protein Cas6/Csy4, subtype I-F/YPEST {ECO:0000313|EMBL:ESP92395.1}; TaxID=1353533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas luteoviolacea 2ta16.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_340_9
Methylophaga lonarensis, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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7795..7947
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Methylophaga lonarensis MPL RepID=M7NZ77_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EMR12521.1}; TaxID=1286106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga lonarensis MPL.;"
DNA-binding protein
RTP_11222018_0_1um_scaffold_340_10
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7994..8392
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Cellvibrio sp. BR RepID=I3IB44_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIK45279.1}; TaxID=1134474 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio sp. BR.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_340_11
Yersinia frederiksenii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10853..11842)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Vibrio cholerae HE48 RepID=F9B116_VIBCL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJI86204.1}; TaxID=1454377 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia frederiksenii Y225.;"
RTP_11222018_0_1um_scaffold_340_12
GWE2_Gallionellales_58_10_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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12930..13217
DNA (288bp) protein (96aa)
Prevent host death protein, Phd antitoxin id=2069357 bin=GWE2_Gallionellales_58_10 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
prevent-host-death protein
Tax=GWE2_Gallionellales_58_10_curated
RTP_11222018_0_1um_scaffold_340_13
GWE2_Gallionellales_58_10_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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13214..13513
DNA (300bp) protein (100aa)
Plasmid stabilization system id=2069354 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
plasmid stabilization protein
Tax=GWE2_Gallionellales_58_10_curated
RTP_11222018_0_1um_scaffold_340_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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13671..14030
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AMC8_9PROT
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_340_15
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14031..14777
DNA (747bp) protein (249aa)
RES domain-containing protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAJ0_9PROT
RES domain-containing protein
RES domain-containing protein {ECO:0000313|EMBL:BAN35945.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_340_16
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

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comp(14857..15624)
DNA (768bp) protein (256aa)
IclR family transcriptional regulator n=1 Tax=Mariprofundus ferrooxydans RepID=UPI00036FB3E4
Transcriptional regulator, IclR family protein {ECO:0000313|EMBL:EAU54434.1}; TaxID=314345 species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus ferrooxydans PV-1.;"
IclR family transcriptional regulator
RTP_11222018_0_1um_scaffold_340_17
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

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15715..17910
DNA (2196bp) protein (732aa)
transketolase n=1 Tax=Mariprofundus ferrooxydans RepID=UPI00036379D4
Transketolase, central region {ECO:0000313|EMBL:EAU54435.1}; TaxID=314345 species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus ferrooxydans PV-1.;"
transketolase
RTP_11222018_0_1um_scaffold_340_18
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

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17916..19247
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYX1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EAU54436.1}; TaxID=314345 species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus ferrooxydans PV-1.;"
Hrp-dependent type III effector protein
RTP_11222018_0_1um_scaffold_340_19
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

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19247..20740
DNA (1494bp) protein (498aa)
FAD-binding protein n=1 Tax=Mariprofundus ferrooxydans RepID=UPI00037C49F9
Glycolate oxidase subunit GlcD {ECO:0000313|EMBL:EAU54437.1}; TaxID=314345 species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus ferrooxydans PV-1.;"
FAD linked oxidase domain protein
RTP_11222018_0_1um_scaffold_340_20
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

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20740..21813
DNA (1074bp) protein (358aa)
Glycolate oxidase, GlcE subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYW9_9PROT
Glycolate oxidase, GlcE subunit {ECO:0000313|EMBL:EAU54438.1}; TaxID=314345 species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus ferrooxydans PV-1.;"
FAD linked oxidase
RTP_11222018_0_1um_scaffold_340_21
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21815..23023
DNA (1209bp) protein (403aa)
glycolate oxidase n=1 Tax=Mariprofundus ferrooxydans RepID=UPI00037A9E24
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=314345 species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus ferrooxydans PV-1.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_340_trna_2
unknown

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comp(23098..23170)
DNA (73bp)
transferRNA Arg
RTP_11222018_0_1um_scaffold_340_22
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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23231..23773
DNA (543bp) protein (181aa)
peroxiredoxin (EC:1.11.1.15)
Peroxiredoxin {ECO:0000313|EMBL:BAN34832.1}; EC=1.11.1.15 {ECO:0000313|EMBL:BAN34832.1};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Peroxiredoxin n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B2E2_9PROT
RTP_11222018_0_1um_scaffold_340_23
unknown

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comp(23788..23916)
DNA (129bp) protein (43aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_340_24
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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24005..24688
DNA (684bp) protein (228aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6)
Leucyl/phenylalanyl-tRNA--protein transferase (L/F-transferase) (Leucyltransferase) (Phenyalanyltransferase) n=1 Tax=mine drainage metagenome RepID=E6QTF2_9ZZZZ
RTP_11222018_0_1um_scaffold_340_25

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24688..25419
DNA (732bp) protein (244aa)
Putative arginyl-tRNA--protein transferase (R-transferase) (Arginyltransferase) Ate-like {ECO:0000313|EMBL:CBI10525.1}; EC=2.3.2.8 {ECO:0000313|EMBL:CBI10525.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative arginyl-tRNA--protein transferase (R-transferase) (Arginyltransferase) Ate-like n=1 Tax=mine drainage metagenome RepID=E6QTF3_9ZZZZ
arginyl-tRNA-protein transferase
RTP_11222018_0_1um_scaffold_340_26
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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25382..25786
DNA (405bp) protein (135aa)
globin n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037EFA62
globin
Globin {ECO:0000313|EMBL:ACL74049.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
RTP_11222018_0_1um_scaffold_340_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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25798..26592
DNA (795bp) protein (265aa)
thymidylate synthase (EC:2.1.1.45)
thymidylate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000367B6D7
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_340_28

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26589..28214
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QXG6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11940.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
response regulator receiver domain-containing protein
RTP_11222018_0_1um_scaffold_340_29

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28184..28867
DNA (684bp) protein (228aa)
Putative Signal transduction histidine kinase sensor protein n=1 Tax=mine drainage metagenome RepID=E6QXG5_9ZZZZ
Putative Signal transduction histidine kinase sensor protein {ECO:0000313|EMBL:CBI11939.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
signal transduction histidine kinase
Displaying items 1-30 of 40 in total

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