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RTP_11222018_0_1um_scaffold_724

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_724_1
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

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3..665
DNA (663bp) protein (221aa)
Segregation and condensation protein A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFM3_9PROT
chromosome segregation and condensation protein ScpA
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
RTP_11222018_0_1um_scaffold_724_2

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662..1237
DNA (576bp) protein (192aa)
Putative Prokaryotic chromosome segregation and condensation protein ScpB n=1 Tax=mine drainage metagenome RepID=E6QPV4_9ZZZZ
Putative Prokaryotic chromosome segregation and condensation protein ScpB {ECO:0000313|EMBL:CBI09275.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
condensin subunit ScpB
RTP_11222018_0_1um_scaffold_724_3

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1361..2179
DNA (819bp) protein (273aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QPV3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09274.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_11222018_0_1um_scaffold_724_4

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2344..2727
DNA (384bp) protein (128aa)
Protein crcB homolog n=1 Tax=mine drainage metagenome RepID=E6QPV1_9ZZZZ
Protein crcB homolog {ECO:0000313|EMBL:CBI09272.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
CrcB protein
RTP_11222018_0_1um_scaffold_724_5

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2730..3041
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QPV0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09271.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_724_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3041..3790
DNA (750bp) protein (250aa)
permease n=1 Tax=Thiobacillus denitrificans RepID=UPI000376458D
hypothetical protein
Uncharacterized conserved membrane protein {ECO:0000313|EMBL:AAZ96991.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_724_7

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3794..4453
DNA (660bp) protein (220aa)
Putative integral membrane protein n=1 Tax=mine drainage metagenome RepID=E6QPU9_9ZZZZ
Putative integral membrane protein {ECO:0000313|EMBL:CBI09270.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative integral membrane protein
RTP_11222018_0_1um_scaffold_724_8

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4450..8181
DNA (3732bp) protein (1244aa)
ATP-dependent RNA helicase hrpA {ECO:0000313|EMBL:CBI09269.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBI09269.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ATP-dependent RNA helicase hrpA n=1 Tax=mine drainage metagenome RepID=E6QPU8_9ZZZZ
ATP-dependent helicase HrpA
RTP_11222018_0_1um_scaffold_724_9

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comp(8275..9285)
DNA (1011bp) protein (337aa)
Putative outer membrane protein OmpA (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6QPU7_9ZZZZ
Putative outer membrane protein OmpA (Modular protein) {ECO:0000313|EMBL:CBI09268.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_724_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9374..9925)
DNA (552bp) protein (184aa)
molybdenum cofactor biosynthesis protein MogA n=1 Tax=Thiobacillus thioparus RepID=UPI000363460F
mogA; molybdenum cofactor biosynthesis protein MogA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_724_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9950..11326)
DNA (1377bp) protein (459aa)
phosphomannomutase (EC:5.4.2.8)
phosphoglucomutase n=1 Tax=Thiobacillus thioparus RepID=UPI000366740E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_724_12

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comp(11366..12328)
DNA (963bp) protein (321aa)
Putative alpha/beta hydrolase, YheT type n=1 Tax=mine drainage metagenome RepID=E6QQX4_9ZZZZ
Putative alpha/beta hydrolase, YheT type {ECO:0000313|EMBL:CBI09645.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
alpha/beta hydrolase
RTP_11222018_0_1um_scaffold_724_13
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

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12401..12928
DNA (528bp) protein (176aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC id=2139060 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_11222018_0_1um_scaffold_724_14
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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12936..13514
DNA (579bp) protein (193aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
Holliday junction DNA helicase RuvA n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI000370EB59
ruvA; holliday junction DNA helicase ruva
RTP_11222018_0_1um_scaffold_724_15

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13511..14539
DNA (1029bp) protein (343aa)
Holliday junction DNA helicase ruvB n=1 Tax=mine drainage metagenome RepID=E6QQX1_9ZZZZ
Holliday junction DNA helicase ruvB {ECO:0000313|EMBL:CBI09642.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Holliday junction DNA helicase RuvB
RTP_11222018_0_1um_scaffold_724_16
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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14532..14933
DNA (402bp) protein (134aa)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XEQ2_METNJ
4-hydroxybenzoyl-CoA thioesterase
Methylophaga nitratireducenticrescens strain JAM1, complete genome {ECO:0000313|EMBL:AFI82871.1}; TaxID=754476 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM; 25689 / JAM1).;"
RTP_11222018_0_1um_scaffold_724_17
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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14968..15621
DNA (654bp) protein (218aa)
MotA/TolQ/ExbB proton channel family protein; K03562 biopolymer transport protein TolQ id=12496613 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
protein TolQ
Tax=GWA2_Gallionellales_60_18_curated
RTP_11222018_0_1um_scaffold_724_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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15618..16040
DNA (423bp) protein (141aa)
Tol biopolymer transport system, TolR protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFF6_9PROT
Tol biopolymer transport system, TolR protein {ECO:0000313|EMBL:CCU61881.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
biopolymer transport protein ExbD/TolR
RTP_11222018_0_1um_scaffold_724_19

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16040..16894
DNA (855bp) protein (285aa)
Putative Periplasmic protein TonB n=1 Tax=mine drainage metagenome RepID=E6QQW6_9ZZZZ
Putative Periplasmic protein TonB {ECO:0000313|EMBL:CBI09637.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
protein TolA
RTP_11222018_0_1um_scaffold_724_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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16894..18162
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QQW5_9ZZZZ
tolB; translocation protein TolB
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_11222018_0_1um_scaffold_724_21

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18207..18803
DNA (597bp) protein (199aa)
Peptidoglycan-associated lipoprotein (19 kDa surface antigen) (PPL) n=1 Tax=mine drainage metagenome RepID=E6QQW3_9ZZZZ
Peptidoglycan-associated lipoprotein (19 kDa surface antigen) (PPL) {ECO:0000313|EMBL:CBI09634.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peptidoglycan-associated lipoprotein
RTP_11222018_0_1um_scaffold_724_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18807..19589
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGT6_THIDA
TPR repeat-containing protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98157.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_724_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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19589..20233
DNA (645bp) protein (215aa)
7-carboxy-7-deazaguanine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFF4_9PROT
radical activating enzyme
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_11222018_0_1um_scaffold_724_24
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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20234..20578
DNA (345bp) protein (115aa)
7-cyano-7-deazaguanine synthase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SCJ6_GALCS
exsB protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
Displaying 24 items

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