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RTP_11222018_0_1um_scaffold_748

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_748_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..706)
DNA (705bp) protein (235aa)
Transcription factor jumonji jmjC domain-containing protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SIN8_GALCS
transcription factor jumonji jmjC domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_748_2

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779..1258
DNA (480bp) protein (160aa)
Putative FKBP-type peptidyl-prolyl cis-trans isomerase slyD (PPIase) (Rotamase) (Histidine-rich protein) (WHP) {ECO:0000313|EMBL:CBI09766.1}; EC=5.2.1.8 {ECO:0000313|EMBL:CBI09766.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative FKBP-type peptidyl-prolyl cis-trans isomerase slyD (PPIase) (Rotamase) (Histidine-rich protein) (WHP) n=1 Tax=mine drainage metagenome RepID=E6QR94_9ZZZZ
FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)
RTP_11222018_0_1um_scaffold_748_3

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1342..2310
DNA (969bp) protein (323aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) {ECO:0000313|EMBL:CBI09765.1}; EC=6.4.1.2 {ECO:0000313|EMBL:CBI09765.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
accA; acetyl-CoA carboxylase, carboxyl transferase, subunit alpha (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) n=1 Tax=mine drainage metagenome RepID=E6QR93_9ZZZZ
RTP_11222018_0_1um_scaffold_748_4

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2279..3619
DNA (1341bp) protein (447aa)
Putative tRNA(Ile)-lysidine synthase (TRNA(Ile)-lysidine synthetase) (TRNA(Ile)-2-lysyl-cytidine synthase) TilS {ECO:0000313|EMBL:CBI09764.1}; EC=6.3.4.- {ECO:0000313|EMBL:CBI09764.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative tRNA(Ile)-lysidine synthase (TRNA(Ile)-lysidine synthetase) (TRNA(Ile)-2-lysyl-cytidine synthase) TilS n=1 Tax=mine drainage metagenome RepID=E6QR92_9ZZZZ
tRNA(Ile)-lysidine synthetase
RTP_11222018_0_1um_scaffold_748_5

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comp(3670..4677)
DNA (1008bp) protein (336aa)
Fructose-1,6-bisphosphatase (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {ECO:0000313|EMBL:CBI09763.1}; EC=3.1.3.11 {ECO:0000313|EMBL:CBI09763.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
cbbF; fructose-1,6-bisphosphatase (EC:3.1.3.11)
Fructose-1,6-bisphosphatase (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) n=1 Tax=mine drainage metagenome RepID=E6QR91_9ZZZZ
RTP_11222018_0_1um_scaffold_748_6

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comp(4750..5640)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QR90_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09762.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
TonB family protein
RTP_11222018_0_1um_scaffold_748_7

Not on your lists

comp(5653..7533)
DNA (1881bp) protein (627aa)
Putative exoribonuclease II {ECO:0000313|EMBL:CBI09761.1}; EC=3.1.13.1 {ECO:0000313|EMBL:CBI09761.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative exoribonuclease II n=1 Tax=mine drainage metagenome RepID=E6QR89_9ZZZZ
ribonuclease II
RTP_11222018_0_1um_scaffold_748_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7549..8100)
DNA (552bp) protein (184aa)
Esterase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFS9_THIDA
esterase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_11222018_0_1um_scaffold_748_9

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comp(8100..9056)
DNA (957bp) protein (319aa)
D-alanyl-D-alanine endopeptidase (DD-endopeptidase) (Penicillin-binding protein 5) (PBP-5) {ECO:0000313|EMBL:CBI09759.1}; EC=3.4.21.- {ECO:0000313|EMBL:CBI09759.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
D-alanyl-D-alanine endopeptidase (DD-endopeptidase) (Penicillin-binding protein 5) (PBP-5) n=1 Tax=mine drainage metagenome RepID=E6QR87_9ZZZZ
D-alanyl-D-alanine carboxypeptidase-like protein
RTP_11222018_0_1um_scaffold_748_10
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9280..10866
DNA (1587bp) protein (529aa)
hypothetical protein n=1 Tax=Desulfobacter curvatus RepID=UPI00036238DF
signal transduction protein containing a membrane domain an EAL and a GGDEF domain
Tax=BJP_IG2102_Gammaproteobacteria_62_140
RTP_11222018_0_1um_scaffold_748_11
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10855..11571)
DNA (717bp) protein (239aa)
rsuA; ribosomal small subunit pseudouridine synthase A protein (EC:4.2.1.70)
Ribosomal small subunit pseudouridine synthase A protein {ECO:0000313|EMBL:ABR89883.1}; EC=4.2.1.70 {ECO:0000313|EMBL:ABR89883.1};; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
Ribosomal small subunit pseudouridine synthase A protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SZE3_JANMA
RTP_11222018_0_1um_scaffold_748_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11623..12369)
DNA (747bp) protein (249aa)
hypothetical protein id=12497868 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_11222018_0_1um_scaffold_748_13
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12366..12935)
DNA (570bp) protein (190aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B5D1_9PROT
RNA polymerase, sigma-24 subunit, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:BAN35742.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_748_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13138..13587
DNA (450bp) protein (150aa)
hypothetical protein; K09004 hypothetical protein id=12497870 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_748_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13652..15004
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AM09_9PROT
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_748_16
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15053..16189)
DNA (1137bp) protein (379aa)
deoxyguanosinetriphosphate triphosphohydrolase-like protein; K01129 dGTPase [EC:3.1.5.1] id=12495717 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
dgt; deoxyguanosinetriphosphate triphosphohydrolase
RTP_11222018_0_1um_scaffold_748_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16173..17261)
DNA (1089bp) protein (363aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase id=1318106 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_748_18
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17534..18331
DNA (798bp) protein (266aa)
Transglutaminase domain protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DK41_METS0
transglutaminase domain-containing protein
Transglutaminase domain protein {ECO:0000313|EMBL:ADI28426.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_11222018_0_1um_scaffold_748_19
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18337..19032
DNA (696bp) protein (232aa)
Transglutaminase domain protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DK42_METS0
transglutaminase domain-containing protein
Transglutaminase domain protein {ECO:0000313|EMBL:ADI28427.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_11222018_0_1um_scaffold_748_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19268..19561
DNA (294bp) protein (98aa)
ferredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI000381B45B
ferredoxin 2fe-2s protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_11222018_0_1um_scaffold_748_21

Not on your lists

19558..20160
DNA (603bp) protein (201aa)
Putative alpha/beta-Hydrolase n=1 Tax=mine drainage metagenome RepID=E6QR41_9ZZZZ
Putative alpha/beta-Hydrolase {ECO:0000313|EMBL:CBI09712.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_748_22

Not on your lists

20157..21065
DNA (909bp) protein (303aa)
Nod factor export ATP-binding protein I (Nodulation ATP-binding protein I) {ECO:0000313|EMBL:CBI09711.1}; EC=3.6.3.- {ECO:0000313|EMBL:CBI09711.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Nod factor export ATP-binding protein I (Nodulation ATP-binding protein I) n=1 Tax=mine drainage metagenome RepID=E6QR40_9ZZZZ
ABC-2 type transporter ATPase
RTP_11222018_0_1um_scaffold_748_23

Not on your lists

21062..21844
DNA (783bp) protein (261aa)
Nodulation protein J n=1 Tax=mine drainage metagenome RepID=E6QR39_9ZZZZ
Nodulation protein J {ECO:0000313|EMBL:CBI09710.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ABC-2 type transporter, NodJ
RTP_11222018_0_1um_scaffold_748_24
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21894..23072)
DNA (1179bp) protein (393aa)
phosphodiesterase n=1 Tax=Salisaeta longa RepID=UPI0003B534BA
Putative Metallo-dependent phosphatase {ECO:0000313|EMBL:CDW94840.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative Metallo-dependent phosphatase
RTP_11222018_0_1um_scaffold_748_25

Not on your lists

comp(23517..24224)
DNA (708bp) protein (236aa)
Dihydroorotase (DHOase) {ECO:0000313|EMBL:CBI10837.1}; EC=3.5.2.3 {ECO:0000313|EMBL:CBI10837.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase (DHOase) n=1 Tax=mine drainage metagenome RepID=E6QUB5_9ZZZZ
RTP_11222018_0_1um_scaffold_748_26

Not on your lists

comp(24224..25093)
DNA (870bp) protein (290aa)
Putative methyltransferase n=1 Tax=mine drainage metagenome RepID=E6QUB6_9ZZZZ
Putative methyltransferase {ECO:0000313|EMBL:CBI10838.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_748_27
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25093..25947)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C1X7_NITHN
Transposase {ECO:0000313|EMBL:KFB77825.1}; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_748_28
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26069..26938)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI0003623897
AttM/AiiB family protein {ECO:0000313|EMBL:CCK77672.1}; TaxID=698738 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oleispira.;" source="Oleispira antarctica RB-8.;"
conserved hypothethical protein, AttM-like protein
RTP_11222018_0_1um_scaffold_748_29
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27045..27746)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0J1_NITHN
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:GAO35977.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_748_30
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27730..30420)
DNA (2691bp) protein (897aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0J1_NITHN
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:GAO35977.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
Displaying items 1-30 of 31 in total

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