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RTP_11222018_0_1um_scaffold_834

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_834_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3..671
DNA (669bp) protein (223aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKV9_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96663.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_834_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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681..1226
DNA (546bp) protein (182aa)
Putative signal peptide protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKW0_THIDA
signal peptide protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_834_3
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1223..2170
DNA (948bp) protein (316aa)
Putative ApbE-like lipoprotein n=1 Tax=Ralstonia solanacearum K60-1 RepID=H5WB37_RALSL
Putative ApbE-like lipoprotein {ECO:0000313|EMBL:CCF97008.1}; TaxID=1091042 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum K60-1.;"
apbE; thiamine biosynthesis lipoprotein apbE transmembrane
RTP_11222018_0_1um_scaffold_834_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2167..2712
DNA (546bp) protein (182aa)
Probable transmembrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKW2_THIDA
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_834_5
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2713..3855
DNA (1143bp) protein (381aa)
Putative uncharacterized protein id=1341272 bin=GWE1_T_denit_62_9 species=Nitrosomonas eutropha genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
RTP_11222018_0_1um_scaffold_834_6
BJP_08E140C01_10KDA_Methylophilales_47_88, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3960..5237
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000367C94A
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methylophilales_47_88
RTP_11222018_0_1um_scaffold_834_7
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5359..6264)
DNA (906bp) protein (302aa)
Band 7 protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CS70_SIDLE
band 7 protein
Band 7 protein {ECO:0000313|EMBL:ADE11806.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
RTP_11222018_0_1um_scaffold_834_8
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6283..6690)
DNA (408bp) protein (136aa)
Membrane protein implicated in regulation of membrane protease activity n=1 Tax=Ralstonia sp. AU12-08 RepID=S9THE4_9RALS
hypothetical protein
Membrane protein implicated in regulation of membrane protease activity {ECO:0000313|EMBL:EPX98119.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
RTP_11222018_0_1um_scaffold_834_9
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6939..8351)
DNA (1413bp) protein (471aa)
GTPase Der n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AHJ0_9PROT
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
engA; ribosome-associated GTPase EngA
RTP_11222018_0_1um_scaffold_834_10
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8392..9558)
DNA (1167bp) protein (389aa)
Outer membrane protein assembly factor BamB n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B4W8_9PROT
outer membrane assembly lipoprotein YfgL
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_834_11

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comp(9555..10196)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTN2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10604.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_834_12

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comp(10198..11463)
DNA (1266bp) protein (422aa)
Histidine tRNA synthetase {ECO:0000313|EMBL:CBI10606.1}; EC=6.1.1.21 {ECO:0000313|EMBL:CBI10606.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine tRNA synthetase n=1 Tax=mine drainage metagenome RepID=E6QTN4_9ZZZZ
RTP_11222018_0_1um_scaffold_834_13

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comp(11466..12740)
DNA (1275bp) protein (425aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) {ECO:0000313|EMBL:CBI10607.1}; EC=1.17.7.1 {ECO:0000313|EMBL:CBI10607.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) n=1 Tax=mine drainage metagenome RepID=E6QTN5_9ZZZZ
RTP_11222018_0_1um_scaffold_834_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12746..13555)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00037E5486
XRE family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_834_15

Not on your lists

comp(13555..14319)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTN8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10610.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
type IV pilus biogenesis/stability protein PilW
RTP_11222018_0_1um_scaffold_834_16
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14316..15398)
DNA (1083bp) protein (361aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000255|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=RLMN_METFK
hypothetical protein
RTP_11222018_0_1um_scaffold_834_17

Not on your lists

comp(15405..15830)
DNA (426bp) protein (142aa)
Nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) {ECO:0000313|EMBL:CBI10613.1}; EC=2.7.4.6 {ECO:0000313|EMBL:CBI10613.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ndk; Nucleoside diphosphate kinase (NDK) (NDP kinase) (EC:2.7.4.6)
Nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) n=1 Tax=mine drainage metagenome RepID=E6QTP1_9ZZZZ
RTP_11222018_0_1um_scaffold_834_18

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comp(15977..17782)
DNA (1806bp) protein (602aa)
GTP-binding protein TypA/BipA (Tyrosine phosphorylated protein A) n=1 Tax=mine drainage metagenome RepID=E6QTP2_9ZZZZ
GTP-binding protein TypA/BipA (Tyrosine phosphorylated protein A) {ECO:0000313|EMBL:CBI10614.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
typA; TypA protein
RTP_11222018_0_1um_scaffold_834_19
unknown

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17889..18059
DNA (171bp) protein (57aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_834_20

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18114..19778
DNA (1665bp) protein (555aa)
Putative ATP-dependent RNA helicase n=1 Tax=mine drainage metagenome RepID=E6QTP4_9ZZZZ
Putative ATP-dependent RNA helicase {ECO:0000313|EMBL:CBI10616.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DEAD/DEAH box helicase
RTP_11222018_0_1um_scaffold_834_21
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19923..20138)
DNA (216bp) protein (72aa)
Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
Diacylglycerol kinase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2J9N5_9BURK
Displaying 21 items

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