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RTP_11222018_0_1um_scaffold_941

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_941_1
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..773)
DNA (771bp) protein (257aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJL2_9PROT
leuC; isopropylmalate isomerase large subunit
RTP_11222018_0_1um_scaffold_941_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(836..1858)
DNA (1023bp) protein (341aa)
Putative transporter id=1333548 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transporter
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_941_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1983..2537)
DNA (555bp) protein (185aa)
msrA; peptide methionine sulfoxide reductase MsrA (EC:1.8.4.11)
methionine sulfoxide reductase A n=1 Tax=Ideonella sp. B508-1 RepID=UPI000349B275
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
RTP_11222018_0_1um_scaffold_941_4
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2619..3035
DNA (417bp) protein (139aa)
Uncharacterized protein n=2 Tax=Acidithiobacillus caldus RepID=C6NUG9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFZ90832.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
RTP_11222018_0_1um_scaffold_941_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3013..3669
DNA (657bp) protein (219aa)
DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (EC:3.2.2.- 4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] id=12495624 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
nth; endonuclease III (EC:4.2.99.18)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_941_6
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3666..4754
DNA (1089bp) protein (363aa)
FIST C domain-containing protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ACR8_9PROT
FIST C domain-containing protein
Tax=CG_Beta_01
RTP_11222018_0_1um_scaffold_941_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4717..5175
DNA (459bp) protein (153aa)
hypothetical protein id=12495623 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_941_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5183..5476)
DNA (294bp) protein (98aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DEA0E
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_941_9
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5473..6918)
DNA (1446bp) protein (482aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
NADH-quinone oxidoreductase subunit N n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B2A9_9PROT
proton-translocating NADH-quinone oxidoreductase, chain N
RTP_11222018_0_1um_scaffold_941_10
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6938..8425)
DNA (1488bp) protein (496aa)
NADH dehydrogenase subunit M n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AFU4_9PROT
NADH:ubiquinone oxidoreductase subunit M {ECO:0000313|EMBL:GAO36140.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
nuoM; NADH dehydrogenase subunit M
RTP_11222018_0_1um_scaffold_941_11
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8462..10510)
DNA (2049bp) protein (683aa)
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9V9_9PROT
NADH:ubiquinone oxidoreductase subunit L {ECO:0000313|EMBL:GAO36141.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
nuoL; proton-translocating NADH-quinone oxidoreductase, chain L
RTP_11222018_0_1um_scaffold_941_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10542..10847)
DNA (306bp) protein (102aa)
nuoK; NADH dehydrogenase subunit K (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit K id=1326632 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_941_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10860..11477)
DNA (618bp) protein (206aa)
nuoJ; NADH dehydrogenase I subunit J (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit J n=1 Tax=Thiobacillus thioparus RepID=UPI00035F54A1
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_941_14
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11489..11977)
DNA (489bp) protein (163aa)
nuoI; NADH-ubiquinone oxidoreductase subunit I (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
NADH-quinone oxidoreductase subunit I n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AJY6_COLFT
RTP_11222018_0_1um_scaffold_941_15
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12000..13028)
DNA (1029bp) protein (343aa)
NADH-quinone oxidoreductase subunit H n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AFU3_9PROT
nuoH; NuoH protein
Tax=CG_Beta_01
RTP_11222018_0_1um_scaffold_941_16
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13030..15378)
DNA (2349bp) protein (783aa)
NADH dehydrogenase subunit G (EC:1.6.5.3)
NADH dehydrogenase subunit G n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YA21_NITMU
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
RTP_11222018_0_1um_scaffold_941_17
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15387..15614)
DNA (228bp) protein (76aa)
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5)
NADH dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI000371CBDB
NADH dehydrogenase {ECO:0000313|EMBL:GAO36147.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Displaying 17 items

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